AT2G47750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.946 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : putative indole-3-acetic acid-amido synthetase GH3.9 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes GH3.9, a member of the GH3 family auxin-responsive genes. gh3.9-1 mutants had greater primary root length, increased sensitivity to indole-3-acetic acid (IAA)-mediated root growth inhibition, but no obvious effects on apical dominance or leaf morphology. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
putative indole-3-acetic acid-amido synthetase GH3.9 (GH3.9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: chloroplast envelope; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G28130.1); Has 1429 Blast hits to 1301 proteins in 228 species: Archae - 0; Bacteria - 485; Metazoa - 53; Fungi - 2; Plants - 681; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:19560307..19562974 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66162.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.42 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 585 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVMKLDHDS VLKELERITS KAAEVQDNIL RGILERNKDT EYLSKYMNGS KDVLEFKRAV PIIIYKDIYP YIQRIANGED SSLITGHSIT EILCSSGTSA 101: GEPKLMPTIP EDLDRRTFLY NLIIPIVNKY ITGLDKGKAM YLNFVKAETS TPCGLPIRAV LTSYYKSKHF QCRPYDPFND LTSPIQTILC EDSNQSMYCQ 201: LLAGLIHRHK VMRLGAVFAS AFLRAISYLE KKWSQLCEDI RTGSLNPMIT DPGCQMAMSC LLMSPNPELA SEIEEICGRS SWKGILCQLW PKAKFIEAVV 301: TGSMAQYIPA LEFFSQGKIP LVCPMYASSE TYFGVNVEPL SKPSDVVFTL LPNMCYFEFI PLGKNGTLSF DLDDDEQVPC DKVVDLVNVK LGRYYELVVT 401: TFAGLYRYRI GDVLQVAGFY NGAPQFRFIC RRNVVLSIDL DKTNEEDLHR SITLAKKKLG SNAFLAEYTS YADTSSVPGH YVLFWEIQGH LEPKLMEECC 501: VAVEEELDYI YRQCRTKERS IGALEIRVVK PGTFEKLMDL IISQGGSFNQ YKTPRCVKSN SATFKLLNGH VMASFFSPRD PTWVP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)