AT2G38950.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), Transcription factor jumonji, JmjN (InterPro:IPR003349); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G08620.2); Has 1894 Blast hits to 1417 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 1050; Fungi - 421; Plants - 287; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:16261599..16265044 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79308.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 708 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGIEGVSTYL KSGNMDTISA PPGFVSQTSF VLRNVPRDKE SPRSVSRQEQ TTGFGTDDKD SCNMFLKSRP WIVHGHTIPS SEALRPKKTE VRRRRPLKVS 101: ETKVLEEAPV FNPTEEEFRD TLSYISSLRD RAEPYGICCV VPPPSWKPPC LLKEKQIWEA STFFPQVQLF GIQTENRKIK KEVDADSNDA ASEGVQLCRV 201: ERGPGYTLKS FKNFADTYKK SHFGMKDEVL GSENSSPSLK PNELIVADIE KEYRQIVESP LIEIGVLYGN DLDTATFGSG FPLSAPSESS KYSSGWNLNS 301: TAKLPGSLLS LEDCESVCVP RLSVGMCLSS QFWKSEKERL YSLCYLHVGA PRVWYSVAGC HRSKFKAAMK SFILEMSGEQ PKKSHNPVMM MSPYQLSVEG 401: IPVTRCVQHP GQYVIIFPGS YYSAFDCGFN CLEKANFAPL DWLPHGDIAV QVNQEMSKTS LISYDKLLFS AAREAVKCLK EYGLSKKNTA CYTRWNDSCG 501: TDGLFSNIIK SRIKLEKNRR EFLISSLESQ RMDKSYDAVN KRECCVCLGD LYLSAVNCSC SANRYSCLNH MRKLCACPCD RKSFLYRYTM DELNLLVEAL 601: EGKKLSSMFR WAGIDQKFCA SPATTSSKPE EDKGKETDEV TPCNITRKDV AAGTKDQTRV KARSLADILN VKDGNNDAKE TLESCSKKSN RPCDNDSSEA 701: NAPKKQKQ |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)