AT2G20770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.947 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GCR2-like 2 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor.GCL2 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GCR2-like 2 (GCL2); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: extrinsic to membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: LanC-like protein, eukaryotic (InterPro:IPR020464), Six-hairpin glycosidase-like (InterPro:IPR008928), Lanthionine synthetase C-like (InterPro:IPR007822); BEST Arabidopsis thaliana protein match is: G protein coupled receptor (TAIR:AT1G52920.1); Has 689 Blast hits to 684 proteins in 212 species: Archae - 0; Bacteria - 201; Metazoa - 271; Fungi - 68; Plants - 112; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:8945380..8947041 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44492.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.27 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 405 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGRFFDNVM PDFVKEKESV SGGDTLRNLL AMPYSSLSQQ LKRSALDLKE TVVIETWGFS GQTVEDFTLY SGTLGAAFLL FRAYQVTGNA NDLSLCLEIV 101: KACDTASASS GDVTFLCGRA GVCGLGAVAA KLSGEEDLLN YYLGQFRLIR LSSDLPNELL YGRVGYLWAC LFINKYIGKE TLSSDTIREV AQEIIKEGRS 201: MAKKGSSPLM FEWYGKRYWG AAHGLAGIMH VLMDVQLKPD EAEDVKGTLK YMIKNRFPSG NYPASEEDKK KDILVHWCHG APGIALTLGK AAEVFGEREF 301: LEASAAAAEV VWNRGLLKRV GICHGISGNA YVFLALYRAT GRSEYLYRAK AFASFLLDRG PKLLSKGEMH GGDSPYSLFE GVAGMAYLFL DMVDPSEARF 401: PGYEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)