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AT2G19280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G02150.1); Has 48105 Blast hits to 13725 proteins in 297 species: Archae - 3; Bacteria - 51; Metazoa - 644; Fungi - 771; Plants - 45193; Viruses - 0; Other Eukaryotes - 1443 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC003058EMBL:AK221302
EMBL:AK229469EMBL:BT012576EMBL:CP002685EnsemblPlants:AT2G19280
EnsemblPlants:AT2G19280.1EnsemblPlants:AT2G19280.2entrez:816445Gene3D:1.25.40.10
GeneID:816445Genevisible:Q6NKW7Gramene:AT2G19280.1Gramene:AT2G19280.2
hmmpanther:PTHR24015HOGENOM:HOG000115620InParanoid:Q6NKW7InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT2G19280OMA:PNIFVYSPaxDb:Q6NKW7
Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:Q6NKW7
Pfscan:PS51375PhylomeDB:Q6NKW7PIR:T01276PRIDE:Q6NKW7
PRO:PR:Q6NKW7PROSITE:PS51375ProteinModelPortal:Q6NKW7Proteomes:UP000006548
RefSeq:NP_001189552.1RefSeq:NP_179518.1SMR:Q6NKW7STRING:3702.AT2G19280.1
SUPFAM:SSF81901TAIR:AT2G19280TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.39865UniProt:Q6NKW7
Coordinates (TAIR10) chr2:+:8362672..8364753
Molecular Weight (calculated) 78755.00 Da
IEP (calculated) 8.01
GRAVY (calculated) 0.09
Length 693 amino acids
Sequence (TAIR10)
(BLAST)
001: MWVSIFNLKS SGLNHFCTRT KAFRYFWCRT FSLASLSENN SRFQTDSSRL PYSGSRYYHS SSKHFGEDFV SILKNIDVPR DCVETIRNVL VKHNWIQKYE
101: SGFSTELDQY TVIRILDDLF EETLDASIVL YFFRWSELWI GVEHSSRSIS RMIHILVSGN MNYRAVDMLL CLVKKCSGEE RSLCLVMKDL FETRIDRRVL
201: ETVFSILIDC CIRERKVNMA LKLTYKVDQF GIFPSRGVCI SLLKEILRVH GLELAREFVE HMLSRGRHLN AAVLSLFIRK YCSDGYFDKG WELLMGMKHY
301: GIRPDIVAFT VFIDKLCKAG FLKEATSVLF KLKLFGISQD SVSVSSVIDG FCKVGKPEEA IKLIHSFRLR PNIFVYSSFL SNICSTGDML RASTIFQEIF
401: ELGLLPDCVC YTTMIDGYCN LGRTDKAFQY FGALLKSGNP PSLTTSTILI GACSRFGSIS DAESVFRNMK TEGLKLDVVT YNNLMHGYGK THQLNKVFEL
501: IDEMRSAGIS PDVATYNILI HSMVVRGYID EANEIISELI RRGFVPSTLA FTDVIGGFSK RGDFQEAFIL WFYMADLRMK PDVVTCSALL HGYCKAQRME
601: KAIVLFNKLL DAGLKPDVVL YNTLIHGYCS VGDIEKACEL IGLMVQRGML PNESTHHALV LGLEGKRFVN SETHASMLLE EIIVAKWHLT SGG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)