AT1G80490.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.937 What is SUBAcon? |
|
||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||
| Description (TAIR10) | protein_coding : TOPLESS-related 1 | ||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||
| Computational Description (TAIR10) |
TOPLESS-related 1 (TPR1); INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: cytosol; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT1G15750.4); Has 22237 Blast hits to 13013 proteins in 584 species: Archae - 42; Bacteria - 4724; Metazoa - 7551; Fungi - 4719; Plants - 2339; Viruses - 15; Other Eukaryotes - 2847 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
|
||||||||||||
| Coordinates (TAIR10) | chr1:-:30261094..30266446 | ||||||||||||
| Molecular Weight (calculated) | 124025.00 Da | ||||||||||||
| IEP (calculated) | 7.14 | ||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||
| Length | 1119 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD 0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV 0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAL KHPRTPPSNS AVDYPSGDSD 0301: HVSKRTRPMG ISDEVSLGVN MLPMTFPGQA HGHNQTFKAP DDLPKTVART LSQGSSPMSM DFHPIKQTLL LVGTNVGDIG LWEVGSRERL VQKTFKVWDL 0401: SKCSMPLQAA LVKEPVVSVN RVIWSPDGSL FGVAYSRHIV QLYSYHGGED MRQHLEIDAH VGGVNDIAFS TPNKQLCVTT CGDDKTIKVW DAATGVKRYT 0501: FEGHEAPVYS ICPHYKENIQ FIFSTALDGK IKAWLYDNMG SRVDYEAPGR WCTTMAYSAD GTRLFSCGTS KDGESFIVEW NESEGAVKRT YQGFHKRSLG 0601: VVQFDTTKNR YLAAGDDFSI KFWDMDTIQL LTAIDADGGL QASPRIRFNK EGSLLAVSAN DNMIKVMANS DGLRLLHTVE NLSSESSKPA INSIPMVERP 0701: ASVVSIPGMN GDSRNMVDVK PVITEESNDK SKVWKLTEVG EPSQCRSLRL PENMRVTKIS RLIFTNSGNA ILALASNAIH LLWKWQRNDR NATGKATASL 0801: PPQQWQPASG ILMTNDVAET NPEEAVPCFA LSKNDSYVMS ASGGKISLFN MMTFKTMATF MPPPPAATFL AFHPQDNNII AIGMDDSTIQ IYNVRVDEVK 0901: SKLKGHSKRI TGLAFSNVLN VLVSSGADAQ LCVWNTDGWE KQKSKVLQIP QGRSTSSLSD TRVQFHQDQV HFLVVHETQL AIYETTKLEC MKQWPVRESA 1001: APITHATFSC DSQLIYTSFM DATICVFSSA NLRLRCRVNP SAYLPASLSN SNVHPLVIAA HPQESNMFAV GLSDGGVHIF EPLESEGKWG VAPPPENGSA 1101: SAVTATPSVG ASASDQPQR |
||||||||||||
| See Also |
|
||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)