AT1G56440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: translocon at the outer membrane of chloroplasts 64-III (TAIR:AT3G17970.1); Has 12676 Blast hits to 9635 proteins in 732 species: Archae - 310; Bacteria - 2903; Metazoa - 3634; Fungi - 1231; Plants - 1760; Viruses - 0; Other Eukaryotes - 2838 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:21138765..21141482 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53643.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.11 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||||||
| Length | 476 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARSPSKHGR DQTQDFQGFF NDLQDWELSL KDKDKKIKQQ PANSSNPSSE TFRPSGSGKY DFAKKYRSIR DLSSSLIGES LLDSSSEKEQ GNEFFKQKKF 101: NEAIDCYSRS IALSPNAVTY ANRAMAYLKI KRYREAEVDC TEALNLDDRY IKAYSRRATA RKELGMIKEA KEDAEFALRL EPESQELKKQ YADIKSLLEK 201: EIIEKATGAM QSTAQELLKT SGLDKKIQKP KTEMTSKPVT LVAKTNRDIV QPVLGSNESS GKKLIENIQP EEKSKEGSMK IPAITEILDS KKVTPGSQSY 301: EKEAKPSDRN GTQPSGPENQ VSKQLELKPS VQELAAHAAS LAMTEASKNI KTPKSAYEFE NSWRSFSGDS ALRSQLLKVT TPSSLPQIFK NALTSPVLVD 401: IIKCVASFFT EDMDLAVKYI ENLTKVPRFN MLVMCLTSTE KNELLKIWED VFCNKATPME YAEVLDKLRS RYCLKQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)