AT1G50500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Membrane trafficking VPS53 family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HEAT-INTOLERANT 1 (HIT1); CONTAINS InterPro DOMAIN/s: Vps53-like, N-terminal (InterPro:IPR007234); BEST Arabidopsis thaliana protein match is: Membrane trafficking VPS53 family protein (TAIR:AT1G50970.1); Has 898 Blast hits to 860 proteins in 251 species: Archae - 12; Bacteria - 82; Metazoa - 379; Fungi - 169; Plants - 68; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18708217..18715597 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92534.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 828 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKSSALEYI NQMFPTEASL TGVEPLMQKI QGEIRRVDAS ILSAVRQQSN SGTKAKEDLA DATRAVEELS HKIQEIKSKA EQSEAMVQEI CRDIKKLDFA 101: KKNITTTITA LHRLTMLVSA VEQLQVMASK RQYKEAAAQL EAVNQLCNHF EAYRDVPKIT ELREKLNNIK QILKSHVFSD FSSLGTGKET EETNLLQKLS 201: DSCLVVDALE PSVREELVNN FCSRELTSYE QIFEGAELAK LDKTERRYAW IKRRIRTNEE IWKIFPASWH VPYRLCIQFC KQTRKQVESI LVNMKEKPVV 301: AILLLALQST VEFEKELEKK FGGGVPTKDI EDDIEEIGTW EDNSQNISKI RKKYEKKFAA SQETEENGFQ QEKTGNKDLS VTGAGFNFRG MISSCFEPHL 401: TPYIELEEKT LMDDLEKIVQ EESWDVEDGS QNNVLSSSTQ LFSNIKKSLK RCNTLSKNQT LFNLFKVFQR VLKAYATKLF FKLPKGGTGI VAAATGMDGQ 501: IKVSERDERV ICYIVNSAEY CHKTSGELAE NVSEIIDPHY ADGVDMSEVQ DEFSAVITKA LVTLVLGLET KFDTEMAVMT RVPWSTLESV GDQSGYVNGI 601: NTVLSGSIPV LGKLLTPVYF QFFLDKLASS LGPRFYANIF RCKQLSETGA QQMLLDTQAV KSILLEIPSL ARQTSTAASY SKFVSREMSR AEALLKVILS 701: PIDSVADTYR ALFPEGTPME FQRILELKGL KKADQQSILD DFNKHGPGFT QQSVAAAMPQ PMPTPPAPPL AITNPATAAG FIANSEDVLT RAAALGRGAA 801: STGFKKFIAL TEAAKDRKDG PLRRLFNA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)