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AT5G63050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.627
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : embryo defective 2759
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2759 (EMB2759); Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGE1eggNOG:ENOG410YFKREMBL:BT011233EMBL:BT012160EMBL:CP002688EnsemblPlants:AT5G63050EnsemblPlants:AT5G63050.1
entrez:836425ExpressionAtlas:Q6NM17GeneID:836425GO:GO:0016021Gramene:AT5G63050.1HOGENOM:HOG000006487OMA:DFVESIW
PhylomeDB:Q6NM17Proteomes:UP000006548RefSeq:NP_201110.2STRING:3702.AT5G63050.1TAIR:AT5G63050tair10-symbols:EMB2759TMHMM:TMhelix
UniGene:At.71282UniGene:At.8828UniProt:Q6NM17
Coordinates (TAIR10) chr5:+:25293109..25294799
Molecular Weight (calculated) 39298.70 Da
IEP (calculated) 9.81
GRAVY (calculated) -0.24
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLVTHKLQG SHVLSPWSSP TWTRGLCLKR PVTTVHFVER KDKHLRLKQK CCFSLGSPCN GGLRAKPFRV TSFKGGIQNN ESGGSEGGKK VTNNSVKLSY
101: RSDDDENNVN GSPKAQNTSF SYTSETEDSM TGQPAIQKLF KKWLTLLRTQ SPIQVIDETL GGEQVPQTTK QETETEIRKA ESLQSTKNTV WSWFWSLDAA
201: IKIPLLLFVP AFLAVYAICG AEVTKELSPM WVVGPLIIAL YIKMFQGLCS LYAFCFNQTI KMIRNLPSYY LVAYQYIADG KLKDDVKALV FKPVVAIKNT
301: DYKELTRTKL KQFQEWIIEK YLDFVESVWP YYCRTIRFLK RANLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)