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AT5G61410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25740923 (2015): plastid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : D-ribulose-5-phosphate-3-epimerase
Curator
Summary (TAIR10)
Arabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA
Computational
Description (TAIR10)
D-ribulose-5-phosphate-3-epimerase (RPE); FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: response to cold, carbohydrate metabolic process, response to nematode, embryo development ending in seed dormancy; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G01850.2); Has 9137 Blast hits to 9136 proteins in 2615 species: Archae - 52; Bacteria - 5574; Metazoa - 174; Fungi - 138; Plants - 190; Viruses - 0; Other Eukaryotes - 3009 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G61410-MONOMERBioCyc:ARA:GQT-1498-MONOMEREC:5.1.3.1eggNOG:COG0036eggNOG:KOG3111EMBL:AB010073EMBL:AF015274
EMBL:AY045855EMBL:AY091381EMBL:CP002688EnsemblPlants:AT5G61410EnsemblPlants:AT5G61410.1EnsemblPlants:AT5G61410.2entrez:836262
Gene3D:3.20.20.70GeneID:836262GO:GO:0004750GO:GO:0005829GO:GO:0009052GO:GO:0009409GO:GO:0009507
GO:GO:0009570GO:GO:0009579GO:GO:0009624GO:GO:0009941GO:GO:0010319GO:GO:0019323GO:GO:0044262
GO:GO:0046872GO:GO:0048046Gramene:AT5G61410.1Gramene:AT5G61410.2gramene_pathway:5.1.3.1gramene_pathway:CALVIN-PWYgramene_pathway:NONOXIPENT-PWY
gramene_pathway:PWY-5723gramene_plant_reactome:1119519gramene_plant_reactome:6877218hmmpanther:PTHR11749hmmpanther:PTHR11749:SF4HOGENOM:HOG000259347IntAct:Q9SAU2
InterPro:IPR000056InterPro:IPR011060InterPro:IPR013785KEGG:00030+5.1.3.1KEGG:00040+5.1.3.1KEGG:00710+5.1.3.1KEGG:ath:AT5G61410
KO:K01783OMA:ANFGAECPANTHER:PTHR11749Pfam:PF00834PhylomeDB:Q9SAU2PROSITE:PS01085PROSITE:PS01086
Proteomes:UP000006548RefSeq:NP_200949.1RefSeq:NP_851240.1scanprosite:PS01085scanprosite:PS01086SMR:Q9SAU2STRING:3702.AT5G61410.1
SUPFAM:SSF51366TAIR:AT5G61410tair10-symbols:EMB2728tair10-symbols:RPETIGRfam:TIGR01163TIGRFAMs:TIGR01163UniGene:At.25118
UniGene:At.70668UniProt:Q9SAU2
Coordinates (TAIR10) chr5:-:24684085..24685836
Molecular Weight (calculated) 30010.40 Da
IEP (calculated) 8.22
GRAVY (calculated) 0.16
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)