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AT5G53400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Encodes BOBBER1 (BOB1), a non-canonical small heat shock protein required for both development and thermotolerance. BOB1 is cytoplasmic at basal temperatures but forms heat shock granules containing canonical small heat shock proteins at high temperatures.
Computational
Description (TAIR10)
BOBBER1 (BOB1); CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT4G27890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20666eggNOG:ENOG410XQVUeggNOG:KOG2265EMBL:AB020754EMBL:AK227305EMBL:AY087741EMBL:BT003074
EMBL:CP002688EnsemblPlants:AT5G53400EnsemblPlants:AT5G53400.1entrez:835421Gene3D:2.60.40.790GeneID:835421Genevisible:Q9LV09
GO:GO:0005737GO:GO:0005829GO:GO:0006457GO:GO:0009408GO:GO:0009555GO:GO:0009735GO:GO:0009880
GO:GO:0009965GO:GO:0010286GO:GO:0010450GO:GO:0032502GO:GO:0048448GO:GO:0048833Gramene:AT5G53400.1
hmmpanther:PTHR12356hmmpanther:PTHR12356:SF3HOGENOM:HOG000182245InParanoid:Q9LV09IntAct:Q9LV09InterPro:IPR007052InterPro:IPR008978
KEGG:ath:AT5G53400ncoils:CoilOMA:KAMNFCPPaxDb:Q9LV09Pfam:PF04969Pfam:Q9LV09Pfscan:PS51203
PhylomeDB:Q9LV09PRIDE:Q9LV09PRO:PR:Q9LV09PROSITE:PS51203ProteinModelPortal:Q9LV09Proteomes:UP000006548RefSeq:NP_200152.1
SMR:Q9LV09STRING:3702.AT5G53400.1SUPFAM:SSF49764TAIR:AT5G53400tair10-symbols:BOB1UniGene:At.27931UniProt:Q9LV09
Coordinates (TAIR10) chr5:+:21661588..21663383
Molecular Weight (calculated) 34508.30 Da
IEP (calculated) 4.99
GRAVY (calculated) -0.73
Length 304 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIISEVEEE SSSSRPMIFP FRATLSSANP LGFLEKVFDF LGEQSDFLKK PSAEDEIVVA VRAAKEKLKK AEKKKAEKES VKPVEKKAEK EIVKLVEKKV
101: EKESVKPTIA ASSAEPIEVE KPKEEEEKKE SGPIVPNKGN GTDLENYSWI QNLQEVTVNI PVPTGTKART VVCEIKKNRL KVGLKGQDPI VDGELYRSVK
201: PDDCYWNIED QKVISILLTK SDQMEWWKCC VKGEPEIDTQ KVEPETSKLG DLDPETRSTV EKMMFDQRQK QMGLPTSEEL QKQEILKKFM SEHPEMDFSN
301: AKFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)