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AT5G49180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily
Curator
Summary (TAIR10)
Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, developing seed stage, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT3G06830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G49180-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IIX3EMBL:AB016872EMBL:AY075680EMBL:AY088442
EMBL:BT002211EMBL:CP002688EnsemblPlants:AT5G49180EnsemblPlants:AT5G49180.1entrez:834977Gene3D:1.20.140.40Gene3D:2.160.20.10
GeneID:834977Genevisible:Q9FJ21GO:GO:0004857GO:GO:0005576GO:GO:0005618GO:GO:0030599GO:GO:0042545
GO:GO:0045330GO:GO:0045490GO:GO:0048358GO:GO:0048359Gramene:AT5G49180.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081
hmmpanther:PTHR31707hmmpanther:PTHR31707:SF13HOGENOM:HOG000217409InParanoid:Q9FJ21InterPro:IPR000070InterPro:IPR006501InterPro:IPR011050
InterPro:IPR012334InterPro:IPR018040InterPro:IPR033131KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT5G49180KO:K01051
OMA:QNCNIVVPaxDb:Q9FJ21Pfam:PF01095Pfam:PF04043Pfam:Q9FJ21PhylomeDB:Q9FJ21PRIDE:Q9FJ21
PRO:PR:Q9FJ21PROSITE:PS00503PROSITE:PS00800ProteinModelPortal:Q9FJ21Proteomes:UP000006548RefSeq:NP_199729.1scanprosite:PS00503
scanprosite:PS00800SMART:SM00856SMR:Q9FJ21STRING:3702.AT5G49180.1SUPFAM:SSF101148SUPFAM:SSF51126TAIR:AT5G49180
TIGRfam:TIGR01614TIGRFAMs:TIGR01614TMHMM:TMhelixUniGene:At.27750UniPathway:UPA00545UniProt:Q9FJ21
Coordinates (TAIR10) chr5:-:19940783..19942876
Molecular Weight (calculated) 62802.50 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.22
Length 571 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVDGELKKK KCIIAGVITA LLVLMVVAVG ITTSRNTSHS EKIVPVQIKT ATTAVEAVCA PTDYKETCVN SLMKASPDST QPLDLIKLGF NVTIRSIEDS
101: IKKASVELTA KAANDKDTKG ALELCEKLMN DATDDLKKCL DNFDGFSIPQ IEDFVEDLRV WLSGSIAYQQ TCMDTFEETN SKLSQDMQKI FKTSRELTSN
201: GLAMITNISN LLGEFNVTGV TGDLGKYARK LLSAEDGIPS WVGPNTRRLM ATKGGVKANV VVAHDGSGQY KTINEALNAV PKANQKPFVI YIKQGVYNEK
301: VDVTKKMTHV TFIGDGPTKT KITGSLNYYI GKVKTYLTAT VAINGDNFTA KNIGFENTAG PEGHQAVALR VSADLAVFYN CQIDGYQDTL YVHSHRQFFR
401: DCTVSGTVDF IFGDGIVVLQ NCNIVVRKPM KSQSCMITAQ GRSDKRESTG LVLQNCHITG EPAYIPVKSI NKAYLGRPWK EFSRTIIMGT TIDDVIDPAG
501: WLPWNGDFAL NTLYYAEYEN NGPGSNQAQR VKWPGIKKLS PKQALRFTPA RFLRGNLWIP PNRVPYMGNF Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)