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AT5G48600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : structural maintenance of chromosome 3
Curator
Summary (TAIR10)
member of SMC subfamily
Computational
Description (TAIR10)
structural maintenance of chromosome 3 (SMC3); FUNCTIONS IN: transporter activity, ATP binding; INVOLVED IN: chromosome segregation, chromosome organization; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: Structural maintenance of chromosomes (SMC) family protein (TAIR:AT3G54670.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1196eggNOG:KOG0996EMBL:AB015468EMBL:CP002688EnsemblPlants:AT5G48600EnsemblPlants:AT5G48600.1entrez:834917
ExpressionAtlas:Q9FJL0Gene3D:3.40.50.300GeneID:834917Genevisible:Q9FJL0GO:GO:0000070GO:GO:0005524GO:GO:0005634
GO:GO:0005694GO:GO:0007076GO:GO:0009793GO:GO:0051301GO:GO:0051321hmmpanther:PTHR18937hmmpanther:PTHR18937:SF231
HOGENOM:HOG000184777InParanoid:Q9FJL0InterPro:IPR003395InterPro:IPR010935InterPro:IPR024704InterPro:IPR027417ncoils:Coil
PaxDb:Q9FJL0Pfam:PF02463Pfam:PF06470Pfam:Q9FJL0PhylomeDB:Q9FJL0PIRSF:PIRSF005719PRIDE:Q9FJL0
PRO:PR:Q9FJL0ProteinModelPortal:Q9FJL0Proteomes:UP000006548Reactome:R-ATH-2299718Reactome:R-ATH-2514853RefSeq:NP_199671.1SMART:SM00968
SMR:Q9FJL0STRING:3702.AT5G48600.2SUPFAM:0038317SUPFAM:SSF52540SUPFAM:SSF75553TAIR:AT5G48600tair10-symbols:ATCAP-C
tair10-symbols:ATSMC3tair10-symbols:ATSMC4tair10-symbols:SMC3UniGene:At.29839UniProt:Q9FJL0
Coordinates (TAIR10) chr5:+:19701908..19709091
Molecular Weight (calculated) 141138.00 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.75
Length 1241 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEEDEPMGGG ESEPEQRKSG TPRLYIKELV MRNFKSYAGE QRVGPFHKSF SAVVGPNGSG KSNVIDAMLF VFGKRAKQMR LNKVSELIHN STNHQNLDSA
0101: GVSVQFEEII DLENGLYETV PGSDFMITRV AFRDNSSKYY INERSSNFTE VTKKLKGKGV DLDNNRFLIL QGEVEQISLM KPKAQGPHDE GFLEYLEDII
0201: GTNKYVEKID ELNKQLETLN ESRSGVVQMV KLAEKERDNL EGLKDEAETY MLKELSHLKW QEKATKMAYE DTVAKITEQR DSLQNLENSL KDERVKMDES
0301: NEELKKFESV HEKHKKRQEV LDNELRACKE KFKEFERQDV KHREDLKHVK QKIKKLEDKL EKDSSKIGDM TKESEDSSNL IPKLQENIPK LQKVLLDEEK
0401: KLEEIKAIAK VETEGYRSEL TKIRAELEPW EKDLIVHRGK LDVASSESEL LSKKHEAALK AFTDAQKQLS DISTRKKEKA AATTSWKADI KKKKQEAIEA
0501: RKVEEESLKE QETLVPQEQA AREKVAELKS AMNSEKSQNE VLKAVLRAKE NNQIEGIYGR MGDLGAIDAK YDVAISTACA GLDYIVVETT SSAQACVELL
0601: RKGNLGFATF MILEKQTDHI HKLKEKVKTP EDVPRLFDLV RVKDERMKLA FYAALGNTVV AKDLDQATRI AYGGNREFRR VVALDGALFE KSGTMSGGGG
0701: KARGGRMGTS IRATGVSGEA VANAENELSK IVDMLNNIRE KVGNAVRQYR AAENEVSGLE MELAKSQREI ESLNSEHNYL EKQLASLEAA SQPKTDEIDR
0801: LKELKKIISK EEKEIENLEK GSKQLKDKLQ TNIENAGGEK LKGQKAKVEK IQTDIDKNNT EINRCNVQIE TNQKLIKKLT KGIEEATREK ERLEGEKENL
0901: HVTFKDITQK AFEIQETYKK TQQLIDEHKD VLTGAKSDYE NLKKSVDELK ASRVDAEFKV QDMKKKYNEL EMREKGYKKK LNDLQIAFTK HMEQIQKDLV
1001: DPDKLQATLM DNNLNEACDL KRALEMVALL EAQLKELNPN LDSIAEYRSK VELYNGRVDE LNSVTQERDD TRKQYDELRK RRLDEFMAGF NTISLKLKEM
1101: YQMITLGGDA ELELVDSLDP FSEGVVFSVR PPKKSWKNIA NLSGGEKTLS SLALVFALHH YKPTPLYVMD EIDAALDFKN VSIVGHYVKD RTKDAQFIII
1201: SLRNNMFELA DRLVGIYKTD NCTKSITINP GSFAVCQKTP A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)