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AT5G41480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Folylpolyglutamate synthetase family protein
Curator
Summary (TAIR10)
Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis.
Computational
Description (TAIR10)
GLOBULAR ARREST1 (GLA1); FUNCTIONS IN: dihydrofolate synthase activity; INVOLVED IN: one-carbon metabolic process, embryo development ending in seed dormancy; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mur ligase, central (InterPro:IPR013221), Folylpolyglutamate synthetase, conserved site (InterPro:IPR018109), Mur ligase, C-terminal (InterPro:IPR004101), Folylpolyglutamate synthetase (InterPro:IPR001645); BEST Arabidopsis thaliana protein match is: DHFS-FPGS homolog B (TAIR:AT5G05980.2); Has 8245 Blast hits to 8243 proteins in 2505 species: Archae - 47; Bacteria - 5105; Metazoa - 156; Fungi - 354; Plants - 131; Viruses - 0; Other Eukaryotes - 2452 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT5G41480-MONOMERBRENDA:6.3.2.12EC:6.3.2.12eggNOG:COG0285eggNOG:KOG2525EMBL:AB006707EMBL:AJ250872
EMBL:AK229500EMBL:BT008673EMBL:CP002688EnsemblPlants:AT5G41480EnsemblPlants:AT5G41480.1entrez:834149Gene3D:3.40.1190.10
Gene3D:3.90.190.20GeneID:834149Genevisible:F4JYE9GO:GO:0004326GO:GO:0005524GO:GO:0005759GO:GO:0006730
GO:GO:0006761GO:GO:0008841GO:GO:0009793GO:GO:0046654Gramene:AT5G41480.1gramene_pathway:6.3.2.12gramene_pathway:PWY-3742
gramene_pathway:PWY-3841hmmpanther:PTHR11136hmmpanther:PTHR11136:SF0HOGENOM:HOG000265439InParanoid:F4JYE9InterPro:IPR001645InterPro:IPR004101
InterPro:IPR013221InterPro:IPR018109iPTMnet:F4JYE9KEGG:00790+6.3.2.17KEGG:ath:AT5G41480KO:K01930OMA:HFPAVHI
PANTHER:PTHR11136PaxDb:F4JYE9Pfam:PF08245PRIDE:F4JYE9PROSITE:PS01011PROSITE:PS01012ProteinModelPortal:F4JYE9
Proteomes:UP000006548RefSeq:NP_198963.2scanprosite:PS01011scanprosite:PS01012SMR:F4JYE9STRING:3702.AT5G41480.1SUPFAM:SSF53244
SUPFAM:SSF53623TAIR:AT5G41480tair10-symbols:ATDFAtair10-symbols:DFAtair10-symbols:EMB9tair10-symbols:GLA1TIGRfam:TIGR01499
TIGRFAMs:TIGR01499UniGene:At.28190UniPathway:UPA00077unipathway:UPA00850UniProt:F4JYE9
Coordinates (TAIR10) chr5:+:16595967..16598523
Molecular Weight (calculated) 56907.40 Da
IEP (calculated) 7.20
GRAVY (calculated) -0.05
Length 530 amino acids
Sequence (TAIR10)
(BLAST)
001: MRTLWNHFST ISYIKISPRM RRISAANLIS NRNLSTISST EDPELRDFVG FLESLKNYEK SGVPKGAGTD SDDGFDLGRM KRLMLRLRNP HYKYKVVHVA
101: GTKGKGSTSA FLSNILRAGG YSVGCYSSPH ILSIKERISC NGEPVSASTL NDLFYSVKPI LEQSIQEENG SLSHFEILTG IAFSLFEKEN VDIAVIEAGL
201: GGARDATNVI ESSNLAASVI TTIGEEHMAA LGGSLESIAE AKSGIIKHGR PVVLGGPFLP HIEGILRSKA ASVSSSVILA SNIGSSSSIK GIINKNGIGL
301: CQSCDIVIQN EKDDQPIVEL SDVNLRMLGH HQLQNAVTAT CVSLCLRDQG CGRVTDEAIR IGLENTRLLG RSQFLTPKEA ETLLLPGATV LLDGAHTKES
401: ARALKEMIKK DFPEKRLVFV VAMASDKDHV SFAKELLSGL KPEAVILTEA DIGGGKIRST ESSVLKESWI KAADELGSRS MEASENKTVL GSLKLAYKIL
501: SDDTTSSDSG MVIVTGSLHI VSSVLASLQH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)