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AT5G39980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G62930.1); Has 49138 Blast hits to 14545 proteins in 315 species: Archae - 6; Bacteria - 81; Metazoa - 702; Fungi - 707; Plants - 45788; Viruses - 0; Other Eukaryotes - 1854 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB010077EMBL:AK226241EMBL:CP002688EnsemblPlants:AT5G39980EnsemblPlants:AT5G39980.1
entrez:833995Gene3D:1.25.40.10GeneID:833995Genevisible:Q9FLD8GO:GO:0009507Gramene:AT5G39980.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF551HOGENOM:HOG000238434InParanoid:Q9FLD8InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9FLD8KEGG:ath:AT5G39980
OMA:ILSIWVKPaxDb:Q9FLD8Pfam:PF01535Pfam:PF13041Pfam:Q9FLD8Pfscan:PS51375PhylomeDB:Q9FLD8
PRIDE:Q9FLD8PRO:PR:Q9FLD8PROSITE:PS51375ProteinModelPortal:Q9FLD8Proteomes:UP000006548RefSeq:NP_198814.1SMR:Q9FLD8
STRING:3702.AT5G39980.1SUPFAM:SSF81901TAIR:AT5G39980TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.30314UniGene:At.70072
UniProt:Q9FLD8
Coordinates (TAIR10) chr5:-:16001036..16003072
Molecular Weight (calculated) 78277.40 Da
IEP (calculated) 8.37
GRAVY (calculated) -0.28
Length 678 amino acids
Sequence (TAIR10)
(BLAST)
001: MYIEIASSSS LSLPLLPLTR PHIYTSIPFS TIPEARQRNL IFTVSASSSS ESTQNKKVWR KQPEKNTTSS FQALRKHRRY QRSAFLDHNV DMDELLASIH
101: QTQNEKELFS LLSTYKDRQL SIRFMVSLLS RENDWQRSLA LLDWVHEEAK YTPSVFAYNV VLRNVLRAKQ FDIAHGLFDE MRQRALAPDR YTYSTLITSF
201: GKEGMFDSAL SWLQKMEQDR VSGDLVLYSN LIELSRRLCD YSKAISIFSR LKRSGITPDL VAYNSMINVY GKAKLFREAR LLIKEMNEAG VLPNTVSYST
301: LLSVYVENHK FLEALSVFAE MKEVNCALDL TTCNIMIDVY GQLDMVKEAD RLFWSLRKMD IEPNVVSYNT ILRVYGEAEL FGEAIHLFRL MQRKDIEQNV
401: VTYNTMIKIY GKTMEHEKAT NLVQEMQSRG IEPNAITYST IISIWGKAGK LDRAATLFQK LRSSGVEIDQ VLYQTMIVAY ERVGLMGHAK RLLHELKLPD
501: NIPRETAITI LAKAGRTEEA TWVFRQAFES GEVKDISVFG CMINLYSRNQ RYVNVIEVFE KMRTAGYFPD SNVIAMVLNA YGKQREFEKA DTVYREMQEE
601: GCVFPDEVHF QMLSLYSSKK DFEMVESLFQ RLESDPNVNS KELHLVVAAL YERADKLNDA SRVMNRMRER GILKPFPG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)