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AT5G27540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid
  • PMID:22923678 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): unclear
  • PMID:15276431 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MIRO-related GTP-ase 1
Curator
Summary (TAIR10)
Encodes a protein with similarity to GTPases that is localized to the mitochondrion. Involved in embryogenesis, pollen tube growth and required for mitochondrial development.
Computational
Description (TAIR10)
MIRO-related GTP-ase 1 (MIRO1); FUNCTIONS IN: GTP binding; INVOLVED IN: pollen tube growth, mitochondrion organization, embryo development, embryo development ending in seed dormancy; LOCATED IN: mitochondrion; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF hand associated, type-1 (InterPro:IPR013566), Mitochondrial Rho-like (InterPro:IPR013684), EF hand associated, type-2 (InterPro:IPR013567), Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Mitochondrial Rho GTPase (InterPro:IPR021181), MIRO (InterPro:IPR020860); BEST Arabidopsis thaliana protein match is: MIRO-related GTP-ase 2 (TAIR:AT3G63150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:3.6.5.-eggNOG:ENOG410XRHWeggNOG:KOG1707EMBL:AC007478EMBL:AY081280EMBL:BT003352EMBL:CP002688
EnsemblPlants:AT5G27540EnsemblPlants:AT5G27540.1EnsemblPlants:AT5G27540.2entrez:832814Gene3D:1.10.238.10Gene3D:3.40.50.300GeneID:832814
Genevisible:Q8RXF8GO:GO:0003924GO:GO:0005509GO:GO:0005525GO:GO:0005739GO:GO:0007005GO:GO:0007264
GO:GO:0009793GO:GO:0009860GO:GO:0031307Gramene:AT5G27540.1Gramene:AT5G27540.2hmmpanther:PTHR24072hmmpanther:PTHR24072:SF73
HOGENOM:HOG000215553IntAct:Q8RXF8InterPro:IPR001806InterPro:IPR011992InterPro:IPR013566InterPro:IPR013567InterPro:IPR018247
InterPro:IPR020860InterPro:IPR021181InterPro:IPR027417iPTMnet:Q8RXF8KEGG:ath:AT5G27540KO:K07870OMA:PNARETT
PaxDb:Q8RXF8Pfam:PF00071Pfam:PF08355Pfam:PF08356Pfam:Q8RXF8Pfscan:PS51419Pfscan:PS51423
PhylomeDB:Q8RXF8PIRSF:PIRSF037488PRIDE:Q8RXF8PRO:PR:Q8RXF8PROSITE:PS00018PROSITE:PS51419PROSITE:PS51423
ProteinModelPortal:Q8RXF8Proteomes:UP000006548Reactome:R-ATH-194840RefSeq:NP_001031953.1RefSeq:NP_198106.1scanprosite:PS00018SMR:Q8RXF8
STRING:3702.AT5G27540.1SUPFAM:SSF47473SUPFAM:SSF52540SwissPalm:Q8RXF8TAIR:AT5G27540tair10-symbols:emb2473tair10-symbols:MIRO1
TMHMM:TMhelixUniGene:At.23163UniGene:At.67016UniGene:At.69369UniProt:Q8RXF8
Coordinates (TAIR10) chr5:+:9722816..9727112
Molecular Weight (calculated) 72326.30 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.25
Length 648 amino acids
Sequence (TAIR10)
(BLAST)
001: MARYAAGAVD CPGSPKSVRI VVVGDKGTGK SSLIVAAATD SFPPNVPPVL PDYKLPIEFF PDGIPVTIVD TSSRPEDRDI VAEELKRADA VVLTYACDRP
101: ETLERLSEYW LPELRRLEVK IPIIVAGCKL DFRDDNNQVS LEQVMSPIMQ QFREIETCIE CSALKQLQAQ EVFYYAQKTV LHPTGPLFDQ DSQALKPRCV
201: RALKRIFILC DHDRDGALSE AELNDFQVKC FHAPLQPSEI EGVKRVVQEK LPEGVNERGL TVTGFLFLHA LFIEKGRLET TWTVLRKFGY NNDIRLAEEL
301: LPSAIFKRAP DQSFELTNAA IDFLKGMYML FDDDQDNNLR PQEIEDLFST APESPWKEAP YEDAAEKTAL GGLSFDAFLS MWSLMTLLEP ARSVENLIYI
401: GFPGDPSTAI RVTRRRRLDR KKQQCERKVF QCFVFGPNNA GKSALLNCFL GRSYTDNQES TTDERYAVNM VDESGAKKTL IMREIPEDGV QGLFSSKESL
501: AACDIAVFVY DSSDESSWKR ATQLLVEVAN YGEATGYEVP CLMVSAKDDL DSSPISIQES TRMTQDMGIE PPVSISSKLG DFNNLFRKIL TAAQHPHLSI
601: PETEAGKSRK HYNRLINRSL MAVSIGAAAV VVGLAAYRVY ATRKSSSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)