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AT5G19620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid outer membrane
  • PMID:22923678 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:16618929 (2006): unclear
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : outer envelope protein of 80 kDa
Curator
Summary (TAIR10)
AtOEP80 is paralog to the chloroplastic protein translocation channel Toc75. Mutations in this locus result in embryo lethality.
Computational
Description (TAIR10)
outer envelope protein of 80 kDa (OEP80); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast, plastid, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184), Surface antigen variable number (InterPro:IPR010827); BEST Arabidopsis thaliana protein match is: Outer membrane OMP85 family protein (TAIR:AT3G44160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:17358eggNOG:COG4775eggNOG:ENOG410IIE0EMBL:AF296838EMBL:AF360205EMBL:AY040053EMBL:CP002688
EnsemblPlants:AT5G19620EnsemblPlants:AT5G19620.1entrez:832082GeneID:832082Genevisible:Q9C5J8GO:GO:0005739GO:GO:0009507
GO:GO:0009536GO:GO:0009658GO:GO:0009707GO:GO:0009941GO:GO:0016020Gramene:AT5G19620.1hmmpanther:PTHR12815
hmmpanther:PTHR12815:SF7HOGENOM:HOG000233123InParanoid:Q9C5J8InterPro:IPR000184KEGG:ath:AT5G19620ncoils:CoilOMA:AGLIFQH
PaxDb:Q9C5J8Pfam:PF01103Pfam:Q9C5J8PhylomeDB:Q9C5J8PRIDE:Q9C5J8PRO:PR:Q9C5J8PROSITE:PS51779
ProteinModelPortal:Q9C5J8Proteomes:UP000006548RefSeq:NP_568378.1SMR:Q9C5J8STRING:3702.AT5G19620.1SwissPalm:Q9C5J8TAIR:AT5G19620
tair10-symbols:ATOEP80tair10-symbols:EMB213tair10-symbols:OEP80tair10-symbols:TOC75TCDB:1.B.33.2.2UniGene:At.25139UniProt:Q9C5J8
Coordinates (TAIR10) chr5:+:6623323..6627641
Molecular Weight (calculated) 79941.00 Da
IEP (calculated) 8.27
GRAVY (calculated) -0.37
Length 732 amino acids
Sequence (TAIR10)
(BLAST)
001: MHCHNDDVRF SSSSIRIHSP SPKEQHSLLT NLQSCSKTFV SHLSNTRNSL NQMLQSLKNR HTPPPRSVRR PNLPTQMLNS VTQLMIGKSS PISLSLIQST
101: QFNWSESRDE NVETIRGLSS PLLCCASLSL TRPNESTQSV EGKDTVQQQK GHSVSRNAEE RVLISEVLVR TKDGEELERK DLEMEALAAL KACRANSALT
201: IREVQEDVHR IIESGYFCSC TPVAVDTRDG IRLMFQVEPN QEFRGLVCEN ANVLPSKFIH EAFRDGFGKV INIKRLEEAI TSINGWYMER GLFGIVSDID
301: TLSGGIVRLQ VAEAEVNNIS IRFLDRKTGE PTKGKTSPET ILRQLTTKKG QVYSMLQGKR DVDTVLAMGI MEDVSIIPQP AGDSGKVDLI MNCVERPSGG
401: FSAGGGISSG ITSGPLSGLI GSFAYSHRNL FGRNQKLNVS LERGQIDSIF RINYTDPWIE GDDKRTSRSI MVQNSRTPGN LVHGNQPDNS SLTIGRVTAG
501: VEYSRPFRPK WNGTAGLIFQ HAGARDEQGN PIIKDFYSSP LTASGKPHDE TMLAKLESIY TGSGDQGSTM FAFNMEQGLP VLPEWLCFNR VTGRARKGIH
601: IGPARFLFSL SGGHVVGKFS PHEAFVIGGT NSVRGYEEGA VGSGRSYVVG SGELSFPVRG PVEGVIFTDY GTDMGSGSTV PGDPAGARLK PGSGYGYGLG
701: VRVDSPLGPL RLEYAFNDQH AGRFHFGVGL RN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)