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AT4G20740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.934
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G06710.1); Has 37034 Blast hits to 11477 proteins in 267 species: Archae - 10; Bacteria - 18; Metazoa - 245; Fungi - 473; Plants - 35231; Viruses - 0; Other Eukaryotes - 1057 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL080254EMBL:AL161553EMBL:CP002687EnsemblPlants:AT4G20740EnsemblPlants:AT4G20740.1
entrez:827823Gene3D:1.25.40.10GeneID:827823Genevisible:Q9SVH3Gramene:AT4G20740.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF384
HOGENOM:HOG000242162InParanoid:Q9SVH3InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT4G20740OMA:ADLGIYNPaxDb:Q9SVH3
Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:PF13812Pfam:Q9SVH3Pfscan:PS51375PhylomeDB:Q9SVH3
PIR:T10616PRIDE:Q9SVH3PRO:PR:Q9SVH3PROSITE:PS51375ProteinModelPortal:Q9SVH3Proteomes:UP000006548RefSeq:NP_193806.1
SMR:Q9SVH3STRING:3702.AT4G20740.1SUPFAM:SSF81901TAIR:AT4G20740TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.54441
UniProt:Q9SVH3
Coordinates (TAIR10) chr4:+:11126151..11128334
Molecular Weight (calculated) 82434.30 Da
IEP (calculated) 8.09
GRAVY (calculated) -0.17
Length 727 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSPKPPNLS DKSLKPNFFH GHRKPSQNRP TVYGGLFSNR QSIPRVSPQP QSNSLAHRTP FDLRKWDPET HLPPPSPPSH STVISAASER LSPIARFVLD
101: AFRKNRNHWG PSVVSELNKL RRVTPSIVAE VLKLGNDAAV AAKFFHWAGK QKGYKHDFAA YNAFAYCLNR NGHFRAADQL PELMDSQGRP PSEKQFEILI
201: RMHADNRRGL RVYYVYEKMK KFGFKPRVFL YNRIMDALVK NGYFDLALAV YEDFKEDGLV EESTTFMILV KGLCKAGRIE EMLEILQRMR ENLCKPDVFA
301: YTAMIKTLVS EGNLDASLRV WDEMRRDEIK PDVMAYGTLV VGLCKDGRVE RGYELFMEMK GKQILIDREI YRVLIEGFVA DGKVRSACNL WEDLVDSGYI
401: ADIGIYNAVI KGLCSVNQVD KAYKLFQVAI EEELEPDFET LSPIMVAYVV MNRLSDFSNV LERIGELGYP VSDYLTQFFK LLCADEEKNA MALDVFYILK
501: TKGHGSVSVY NILMEALYKM GDIQKSLSLF YEMRKLGFEP DSSSYSIAIC CFVEKGDVKA ACSFHEKIIE MSCVPSIAAY LSLTKGLCQI GEIDAVMLLV
601: RECLGNVESG PMEFKYALTV CHVCKGSNAE KVMKVVDEMN QEGVFINEVI YCAIISGMSK HGTIKVAREV FTELKKRKVM TEADMVVYEE MLIEQTKKKT
701: ADLVLSGIKF FGLESKLRAK GCRLLDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)