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AT4G04350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tRNA synthetase class I (I, L, M and V) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2369 (EMB2369); FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial (InterPro:IPR002302), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT5G49030.1); Has 40727 Blast hits to 36917 proteins in 3154 species: Archae - 1372; Bacteria - 23600; Metazoa - 846; Fungi - 790; Plants - 334; Viruses - 3; Other Eukaryotes - 13782 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G04350-MONOMEREC:6.1.1.4eggNOG:COG0495eggNOG:KOG0435EMBL:AF069441EMBL:AL161500EMBL:AY079159
EMBL:BT002249EMBL:CP002687EnsemblPlants:AT4G04350EnsemblPlants:AT4G04350.1entrez:825755Gene3D:1.10.730.10Gene3D:3.40.50.620
Gene3D:3.90.740.10GeneID:825755Genevisible:Q9XEA0GO:GO:0002161GO:GO:0004823GO:GO:0005524GO:GO:0005739
GO:GO:0006429GO:GO:0009507GO:GO:0009570GO:GO:0009793Gramene:AT4G04350.1gramene_pathway:6.1.1.4gramene_pathway:TRNA-CHARGING-PWY
HAMAP:MF_00049_Bhmmpanther:PTHR11946hmmpanther:PTHR11946:SF7HOGENOM:HOG000200748InParanoid:Q9XEA0InterPro:IPR001412InterPro:IPR002300
InterPro:IPR002302InterPro:IPR009008InterPro:IPR009080InterPro:IPR013155InterPro:IPR014729InterPro:IPR015413InterPro:IPR025709
KEGG:ath:AT4G04350KO:K01869OMA:LHMGHAEPANTHER:PTHR11946:SF7PaxDb:Q9XEA0Pfam:PF00133Pfam:PF08264
Pfam:PF09334Pfam:PF13603PhylomeDB:Q9XEA0PIR:A85055PRIDE:Q9XEA0PRINTS:PR00985PRO:PR:Q9XEA0
PROSITE:PS00178ProteinModelPortal:Q9XEA0Proteomes:UP000006548RefSeq:NP_192344.1scanprosite:PS00178SMR:Q9XEA0STRING:3702.AT4G04350.1
SUPFAM:SSF47323SUPFAM:SSF50677SUPFAM:SSF52374TAIR:AT4G04350tair10-symbols:EMB2369TIGRfam:TIGR00396TIGRFAMs:TIGR00396
UniGene:At.27749UniGene:At.74904UniProt:Q9XEA0
Coordinates (TAIR10) chr4:+:2128129..2133030
Molecular Weight (calculated) 111039.00 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.49
Length 973 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSHHQILQI RSDPFVLSHC CRHTRLTSSL TLQSPLKQPF SCLPFRWRRS YRGGVRSSTT ETHGSKKEAL VSETATTSIE LKRVYPFHEI EPKWQRYWED
101: NRIFRTPDDV DTSKPKFYVL DMFPYPSGAG LHVGHPLGYT ATDILARLRR MQGYNVLHPM GWDAFGLPAE QYAIETGTHP KTTTLKNIDR FRLQLKSLGF
201: SYDWDRELST TEPDYYKWTQ WIFLQLYKKG LAYQAEVPVN WCPALGTVLA NEEVVDGVSE RGGHPVIRKP MRQWMLKITA YADRLLEDLD ELEWPESIKE
301: MQRNWIGRSE GAELNFSILD GEGRETDKEI TVYTTRPDTL FGATYMVVAP EHQLLSYFVT AEQKQQVEEY KDFASRKSDL ERTELQKDKT GVFTGCYAKN
401: PANGDAIPIW VADYVLASYG TGAIMAVPAH DTRDNEFALK YNIPIKWVVR NEANSSDDAK QVYPGLGIIE NSSTLETGLD INQLSSKEAA LKVIEWAERT
501: GNGKKKVNYK LRDWLFARQR YWGEPIPILI LDESGETIAI SESELPLTLP ELNDFTPTGT GEPPLSKAVS WVNTVDPSTG KPAKRETSTM PQWAGSCWYY
601: LRFMDPKNPE ALVDKEKEKY WSPVDVYVGG AEHAVLHLLY SRFWHKVLYD IGVVSTKEPF KCVINQGIIL GEVQYTAWKD QEGNYVSADT EERLNEHQQV
701: TIPEEKVIKS GDHFVLKEDP SIRLIPRVYK MSKSRGNVVN PDDVVLEYGA DSLRLYEMFM GPFRDSKTWN TSGIEGVHRF LARTWRLVIG LPQSDGSFKD
801: GTLVTDDEPT LEQLRTLHKC IAKVTEEIES TRFNTGISGM MEFVNAAYKW NNQPRGIIEP FVLLLSPYAP HMAEELWSRL GHPNSLAYES FPKANPDYLK
901: NTTIVLPVQI NGKTRGTIEV EEGCSEDDAF VLASQDDKLR KYLDGQSIKK RIYVPGKILN VILDRTNVKV TTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)