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AT4G01800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Albino or Glassy Yellow 1
Curator
Summary (TAIR10)
Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression.
Computational
Description (TAIR10)
Albino or Glassy Yellow 1 (AGY1); FUNCTIONS IN: ATPase activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecA Wing/Scaffold (InterPro:IPR011116), SecA, preprotein translocase (InterPro:IPR022491), SecA preprotein, cross-linking domain (InterPro:IPR011130), SecA DEAD-like (InterPro:IPR011115), SecA conserved site (InterPro:IPR020937), SecA motor DEAD (InterPro:IPR014018), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: Preprotein translocase SecA family protein (TAIR:AT1G21650.1); Has 20907 Blast hits to 13323 proteins in 2793 species: Archae - 2; Bacteria - 12417; Metazoa - 53; Fungi - 1; Plants - 99; Viruses - 0; Other Eukaryotes - 8335 (source: NCBI BLink).
Protein Annotations
EMBL:AC007138EMBL:AL161492EMBL:BX827284EMBL:CP002687EnsemblPlants:AT4G01800EnsemblPlants:AT4G01800.1entrez:827922
ExpressionAtlas:Q9SYI0Gene3D:1.10.3060.10Gene3D:3.40.50.300Gene3D:3.90.1440.10GeneID:827922Genevisible:Q9SYI0GO:GO:0005524
GO:GO:0006605GO:GO:0009535GO:GO:0009570GO:GO:0017038HAMAP:MF_01382hmmpanther:PTHR30612hmmpanther:PTHR30612:SF4
HOGENOM:HOG000218168InParanoid:Q9SYI0InterPro:IPR000185InterPro:IPR011115InterPro:IPR011116InterPro:IPR011130InterPro:IPR014018
InterPro:IPR020937InterPro:IPR027417iPTMnet:Q9SYI0Pfam:PF01043Pfam:PF07516Pfam:PF07517Pfam:Q9SYI0
Pfscan:PS51196PhylomeDB:Q9SYI0PIR:B85023PRIDE:Q9SYI0PRINTS:PR00906PRO:PR:Q9SYI0PROSITE:PS01312
PROSITE:PS51196ProteinModelPortal:Q9SYI0Proteomes:UP000006548RefSeq:NP_192089.1scanprosite:PS01312SMART:SM00957SMART:SM00958
SMR:Q9SYI0SUPFAM:SSF52540SUPFAM:SSF81767SUPFAM:SSF81886TAIR:AT4G01800tair10-symbols:AGY1tair10-symbols:AtcpSecA
tair10-symbols:SECA1TCDB:3.A.5.4.2TIGRfam:TIGR00963TIGRFAMs:TIGR00963UniGene:At.34372UniGene:At.49403UniProt:Q9SYI0
Coordinates (TAIR10) chr4:-:770926..776131
Molecular Weight (calculated) 115190.00 Da
IEP (calculated) 6.28
GRAVY (calculated) -0.39
Length 1022 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVSPLCDSQL LYHRPSISPT ASQFVIADGI ILRQNRLLSS SSFWGTKFGN TVKLGVSGCS SCSRKRSTSV NASLGGLLSG IFKGSDNGES TRQQYASIVA
0101: SVNRLETEIS ALSDSELRER TDALKQRAQK GESMDSLLPE AFAVVREASK RVLGLRPFDV QLIGGMVLHK GEIAEMRTGE GKTLVAILPA YLNALSGKGV
0201: HVVTVNDYLA RRDCEWVGQV PRFLGLKVGL IQQNMTPEQR KENYLCDITY VTNSELGFDY LRDNLATSVE ELVLRDFNYC VIDEVDSILI DEARTPLIIS
0301: GPAEKPSDQY YKAAKIASAF ERDIHYTVDE KQKTVLLTEQ GYEDAEEILD VKDLYDPREQ WASYVLNAIK AKELFLRDVN YIIRAKEVLI VDEFTGRVMQ
0401: GRRWSDGLHQ AVEAKEGLPI QNESITLASI SYQNFFLQFP KLCGMTGTAS TESAEFESIY KLKVTIVPTN KPMIRKDESD VVFKAVNGKW RAVVVEISRM
0501: HKTGRAVLVG TTSVEQSDEL SQLLREAGIT HEVLNAKPEN VEREAEIVAQ SGRLGAVTIA TNMAGRGTDI ILGGNAEFMA RLKLREILMP RVVKPTDGVF
0601: VSVKKAPPKR TWKVNEKLFP CKLSNEKAKL AEEAVQSAVE AWGQKSLTEL EAEERLSYSC EKGPVQDEVI GKLRTAFLAI AKEYKGYTDE ERKKVVEAGG
0701: LHVVGTERHE SRRIDNQLRG RSGRQGDPGS SRFFLSLEDN IFRIFGGDRI QGMMRAFRVE DLPIESKMLT KALDEAQRKV ENYFFDIRKQ LFEFDEVLNS
0801: QRDRVYTERR RALVSDSLEP LIIEYAELTM DDILEANIGP DTPKESWDFE KLIAKVQQYC YLLNDLTPDL LKSEGSSYEG LQDYLRARGR DAYLQKREIV
0901: EKQSPGLMKD AERFLILSNI DRLWKEHLQA LKFVQQAVGL RGYAQRDPLI EYKLEGYNLF LEMMAQIRRN VIYSIYQFQP VRVKKDEEKK SQNGKPSKQV
1001: DNASEKPKQV GVTDEPSSIA SA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)