AT4G01800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Albino or Glassy Yellow 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Albino or Glassy Yellow 1 (AGY1); FUNCTIONS IN: ATPase activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecA Wing/Scaffold (InterPro:IPR011116), SecA, preprotein translocase (InterPro:IPR022491), SecA preprotein, cross-linking domain (InterPro:IPR011130), SecA DEAD-like (InterPro:IPR011115), SecA conserved site (InterPro:IPR020937), SecA motor DEAD (InterPro:IPR014018), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: Preprotein translocase SecA family protein (TAIR:AT1G21650.1); Has 20907 Blast hits to 13323 proteins in 2793 species: Archae - 2; Bacteria - 12417; Metazoa - 53; Fungi - 1; Plants - 99; Viruses - 0; Other Eukaryotes - 8335 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:770926..776131 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115190.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1022 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVSPLCDSQL LYHRPSISPT ASQFVIADGI ILRQNRLLSS SSFWGTKFGN TVKLGVSGCS SCSRKRSTSV NASLGGLLSG IFKGSDNGES TRQQYASIVA 0101: SVNRLETEIS ALSDSELRER TDALKQRAQK GESMDSLLPE AFAVVREASK RVLGLRPFDV QLIGGMVLHK GEIAEMRTGE GKTLVAILPA YLNALSGKGV 0201: HVVTVNDYLA RRDCEWVGQV PRFLGLKVGL IQQNMTPEQR KENYLCDITY VTNSELGFDY LRDNLATSVE ELVLRDFNYC VIDEVDSILI DEARTPLIIS 0301: GPAEKPSDQY YKAAKIASAF ERDIHYTVDE KQKTVLLTEQ GYEDAEEILD VKDLYDPREQ WASYVLNAIK AKELFLRDVN YIIRAKEVLI VDEFTGRVMQ 0401: GRRWSDGLHQ AVEAKEGLPI QNESITLASI SYQNFFLQFP KLCGMTGTAS TESAEFESIY KLKVTIVPTN KPMIRKDESD VVFKAVNGKW RAVVVEISRM 0501: HKTGRAVLVG TTSVEQSDEL SQLLREAGIT HEVLNAKPEN VEREAEIVAQ SGRLGAVTIA TNMAGRGTDI ILGGNAEFMA RLKLREILMP RVVKPTDGVF 0601: VSVKKAPPKR TWKVNEKLFP CKLSNEKAKL AEEAVQSAVE AWGQKSLTEL EAEERLSYSC EKGPVQDEVI GKLRTAFLAI AKEYKGYTDE ERKKVVEAGG 0701: LHVVGTERHE SRRIDNQLRG RSGRQGDPGS SRFFLSLEDN IFRIFGGDRI QGMMRAFRVE DLPIESKMLT KALDEAQRKV ENYFFDIRKQ LFEFDEVLNS 0801: QRDRVYTERR RALVSDSLEP LIIEYAELTM DDILEANIGP DTPKESWDFE KLIAKVQQYC YLLNDLTPDL LKSEGSSYEG LQDYLRARGR DAYLQKREIV 0901: EKQSPGLMKD AERFLILSNI DRLWKEHLQA LKFVQQAVGL RGYAQRDPLI EYKLEGYNLF LEMMAQIRRN VIYSIYQFQP VRVKKDEEKK SQNGKPSKQV 1001: DNASEKPKQV GVTDEPSSIA SA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)