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AT4G00220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22822207 (2012): cytosol None
  • PMID:22822207 (2012): nucleus nuclear matrix
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Lateral organ boundaries (LOB) domain family protein
Curator
Summary (TAIR10)
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational
Description (TAIR10)
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:13375eggNOG:ENOG410IWWVeggNOG:ENOG410YA3NEMBL:AB473852EMBL:AF069299EMBL:AF432232EMBL:AL161471
EMBL:BT026407EMBL:CP002687EMBL:DQ446787EMBL:DQ653168EnsemblPlants:AT4G00220EnsemblPlants:AT4G00220.1entrez:828084
GeneID:828084Genevisible:O81323GO:GO:0010089GO:GO:0010199Gramene:AT4G00220.1hmmpanther:PTHR31529hmmpanther:PTHR31529:SF3
HOGENOM:HOG000237548InParanoid:O81323InterPro:IPR004883KEGG:ath:AT4G00220OMA:MSSTWAMPaxDb:O81323Pfam:O81323
Pfam:PF03195Pfscan:PS50891PhylomeDB:O81323PIR:T01350PRO:PR:O81323PROSITE:PS50891Proteomes:UP000006548
RefSeq:NP_191933.1STRING:3702.AT4G00220.1TAIR:AT4G00220tair10-symbols:JLOtair10-symbols:LBD30UniGene:At.21182UniProt:O81323
Coordinates (TAIR10) chr4:+:90147..92087
Molecular Weight (calculated) 23969.40 Da
IEP (calculated) 7.25
GRAVY (calculated) -0.11
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSGNPSSS SGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV HKVFGASNVS KLLHHVPEHK RPDAVVSICF EAQARLRDPI YGCVSHIVSL
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)