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AT3G61140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain
Curator
Summary (TAIR10)
Represses photomorphogenesis and induces skotomorphogenesis in the dark. Component of the nuclear-localized COP9 complex. Mutants display striking purple coloration due to anthocyanin accumulation in their cotyledons, first become defective during embryogenesis and exhibit limited seedling development.
Computational
Description (TAIR10)
FUSCA 6 (FUS6); CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), 26S proteasome, regulatory subunit Rpn7 (InterPro:IPR019585); BEST Arabidopsis thaliana protein match is: COP9 signalosome complex-related / CSN complex-related (TAIR:AT3G12850.1); Has 1199 Blast hits to 1198 proteins in 240 species: Archae - 0; Bacteria - 0; Metazoa - 515; Fungi - 231; Plants - 316; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Protein Annotations
BioGrid:10600eggNOG:ENOG410XRXIeggNOG:KOG0686EMBL:AF360295EMBL:AF395057EMBL:AJ243015EMBL:AK117532
EMBL:AL137898EMBL:AY051056EMBL:CP002686EMBL:L26498EnsemblPlants:AT3G61140EnsemblPlants:AT3G61140.1entrez:825286
Gene3D:1.10.10.10GeneID:825286Genevisible:P45432GO:GO:0000338GO:GO:0005829GO:GO:0006461GO:GO:0006972
GO:GO:0008180GO:GO:0009585GO:GO:0009646GO:GO:0009651GO:GO:0009793GO:GO:0010387GO:GO:0010388
Gramene:AT3G61140.1hmmpanther:PTHR14145hmmpanther:PTHR14145:SF2HOGENOM:HOG000091977InParanoid:P45432IntAct:P45432InterPro:IPR000717
InterPro:IPR011991InterPro:IPR019585InterPro:IPR033008KEGG:ath:AT3G61140KO:K12175ncoils:CoilOMA:IEQEPYV
PANTHER:PTHR14145:SF2PaxDb:P45432PDB:4LCTPDBsum:4LCTPfam:P45432Pfam:PF01399Pfam:PF10602
PhylomeDB:P45432PIR:T47906PRIDE:P45432PRO:PR:P45432ProteinModelPortal:P45432Proteomes:UP000006548Reactome:R-ATH-5696394
Reactome:R-ATH-6781823RefSeq:NP_567109.1SMART:SM00088SMR:P45432STRING:3702.AT3G61140.1SUPFAM:SSF46785TAIR:AT3G61140
tair10-symbols:ATFUS6tair10-symbols:ATSK31tair10-symbols:COP11tair10-symbols:CSN1tair10-symbols:EMB78tair10-symbols:FUS6tair10-symbols:SK31
UniGene:At.303UniProt:P45432
Coordinates (TAIR10) chr3:+:22626335..22628895
Molecular Weight (calculated) 50581.80 Da
IEP (calculated) 7.34
GRAVY (calculated) -0.41
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)