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AT3G10220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tubulin folding cofactor B
Curator
Summary (TAIR10)
Encodes a tubulin-binding cofactor. Homozygous mutant plants are embryo lethal. Heterozygous mutant plants showed increased ploidy and higher numbers of spindles and phragmoplasts, suggesting a role in cell division.
Computational
Description (TAIR10)
tubulin folding cofactor B; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tubulin complex assembly, embryo development, cell division; LOCATED IN: nucleus, cytoplasm, phragmoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytoskeleton-associated protein, CAP-Gly (InterPro:IPR000938); Has 1750 Blast hits to 1417 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 1247; Fungi - 285; Plants - 70; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YKGBeggNOG:KOG3206EMBL:AC009400EMBL:AF486849EMBL:AK176183EMBL:AK176266EMBL:AK176704
EMBL:CP002686EnsemblPlants:AT3G10220EnsemblPlants:AT3G10220.1entrez:820184EvolutionaryTrace:Q67Z52Gene3D:2.30.30.190GeneID:820184
Genevisible:Q67Z52GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0009524GO:GO:0009793GO:GO:0051301
Gramene:AT3G10220.1hmmpanther:PTHR18916HOGENOM:HOG000209180InParanoid:Q67Z52InterPro:IPR000626InterPro:IPR000938InterPro:IPR029071
KEGG:ath:AT3G10220KO:K17262OMA:YNEEEMQPaxDb:Q67Z52PDB:2KJ6PDBsum:2KJ6Pfam:PF01302
Pfam:PF14560Pfam:Q67Z52Pfscan:PS50245PhylomeDB:Q67Z52PRIDE:Q67Z52PRO:PR:Q67Z52PROSITE:PS50245
ProteinModelPortal:Q67Z52Proteomes:UP000006548RefSeq:NP_187633.2SMART:SM01052SMR:Q67Z52STRING:3702.AT3G10220.1SUPFAM:SSF54236
SUPFAM:SSF74924TAIR:AT3G10220UniGene:At.1532UniGene:At.71154UniGene:At.71830UniProt:Q67Z52
Coordinates (TAIR10) chr3:+:3161977..3164037
Molecular Weight (calculated) 27332.20 Da
IEP (calculated) 5.10
GRAVY (calculated) -0.64
Length 243 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)