suba logo
AT3G06960.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pigment defective 320
Curator
Summary (TAIR10)
Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.
Computational
Description (TAIR10)
PIGMENT DEFECTIVE 320 (PDE320); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: acylglycerol transport; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44640.1); Has 48 Blast hits to 47 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:819881eggNOG:ENOG410IEQVeggNOG:ENOG4111J7EEMBL:AC016827EMBL:AF367275EMBL:AY059159EMBL:CP002686
EnsemblPlants:AT3G06960EnsemblPlants:AT3G06960.1entrez:819881ExpressionAtlas:Q9M903GeneID:819881Genevisible:Q9M903GO:GO:0005783
GO:GO:0009507GO:GO:0009536GO:GO:0009707GO:GO:0009941GO:GO:0016020GO:GO:0016021GO:GO:0034196
GO:GO:0042803GO:GO:0070300GO:GO:1990052hmmpanther:PTHR34954hmmpanther:PTHR34954:SF1HOGENOM:HOG000005695InParanoid:Q9M903
KEGG:ath:AT3G06960OMA:DGRWELDPaxDb:Q9M903Pfam:Q9M903PhylomeDB:Q9M903PRIDE:Q9M903PRO:PR:Q9M903
ProteinModelPortal:Q9M903Proteomes:UP000006548RefSeq:NP_566296.1STRING:3702.AT3G06960.1TAIR:AT3G06960tair10-symbols:PDE320tair10-symbols:TGD4
UniGene:At.18751UniGene:At.40432UniProt:Q9M903
Coordinates (TAIR10) chr3:-:2194379..2196504
Molecular Weight (calculated) 52825.10 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.13
Length 479 amino acids
Sequence (TAIR10)
(BLAST)
001: MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)