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AT3G04870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zeta-carotene desaturase
Curator
Summary (TAIR10)
Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.
Computational
Description (TAIR10)
zeta-carotene desaturase (ZDS); FUNCTIONS IN: carotene 7,8-desaturase activity; INVOLVED IN: carotene biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Adrenodoxin reductase (InterPro:IPR000759), Carotene 7,8-desaturase (InterPro:IPR014103); BEST Arabidopsis thaliana protein match is: phytoene desaturase 3 (TAIR:AT4G14210.1); Has 3641 Blast hits to 3625 proteins in 890 species: Archae - 42; Bacteria - 1934; Metazoa - 256; Fungi - 59; Plants - 443; Viruses - 2; Other Eukaryotes - 905 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G04870-MONOMERBioCyc:ARA:GQT-1432-MONOMERBioCyc:MetaCyc:AT3G04870-MONOMERBioGrid:4982DNASU:819647EC:1.3.5.6eggNOG:COG3349
eggNOG:ENOG410IUNMEMBL:AC009465EMBL:AF121947EMBL:AY059920EMBL:AY072096EMBL:AY096583EMBL:CP002686
EMBL:U38550EnsemblPlants:AT3G04870EnsemblPlants:AT3G04870.1EnsemblPlants:AT3G04870.2entrez:819647Gene3D:3.40.50.720GeneID:819647
Genevisible:Q38893GO:GO:0009507GO:GO:0009509GO:GO:0009941GO:GO:0016117GO:GO:0016719GO:GO:0052886
GO:GO:0052887GO:GO:0052889Gramene:AT3G04870.1Gramene:AT3G04870.2gramene_plant_reactome:1119449gramene_plant_reactome:6876480hmmpanther:PTHR10742
hmmpanther:PTHR10742:SF274HOGENOM:HOG000150110InParanoid:Q38893InterPro:IPR002937InterPro:IPR014103InterPro:IPR016040InterPro:IPR023753
KEGG:00906+1.3.5.6KEGG:ath:AT3G04870KO:K00514OMA:CMLTIFMPaxDb:Q38893Pfam:PF01593Pfam:Q38893
PhylomeDB:Q38893PRIDE:Q38893PRO:PR:Q38893ProteinModelPortal:Q38893Proteomes:UP000006548RefSeq:NP_187138.1RefSeq:NP_974222.1
SMR:Q38893STRING:3702.AT3G04870.1SUPFAM:SSF51905TAIR:AT3G04870tair10-symbols:PDE181tair10-symbols:SPC1tair10-symbols:ZDS
TIGRfam:TIGR02732TIGRFAMs:TIGR02732UniGene:At.24092UniGene:At.71000UniPathway:UPA00803UniProt:Q38893
Coordinates (TAIR10) chr3:+:1342842..1346189
Molecular Weight (calculated) 61637.20 Da
IEP (calculated) 7.43
GRAVY (calculated) -0.11
Length 558 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSVVFAAT GSLSVPPLKS RRFYVNSSLD SDVSDMSVNA PKGLFPPEPV PYKGPKLKVA IIGAGLAGMS TAVELLDQGH EVDIYDSRTF IGGKVGSFVD
101: RRGNHIEMGL HVFFGCYNNL FRLMKKVGAE KNLLVKDHTH TFINKDGTIG ELDFRFPVGA PIHGIRAFLV TNQLKPYDKL RNSLALALSP VVKALVDPDG
201: AMRDIRNLDS ISFSDWFLSK GGTRASIQRM WDPVAYALGF IDCDNMSARC MLTIFSLFAT KTEASLLRML KGSPDVYLSG PIKQYITDRG GRIHLRWGCR
301: EILYDKSADG ETYVTGLAIS KATNKKIVKA DVYVAACDVP GIKRLLPKEW RESRFFNDIY ELEGVPVVTV QLRYNGWVTE LQDIELARQL KRAVGLDNLL
401: YTPDADFSCF ADLALASPAD YYIEGQGTLL QCVLTPGDPY MRMPNDKIIE KVAMQVTELF PSSRGLEVTW SSVVKIAQSL YREAPGKDPF RPDQKTPIKN
501: FFLAGSYTKQ DYIDSMEGAT LSGRQASSYI CDAGEELAEL NKKLSSSATA VPDELSLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)