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AT2G47620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SWITCH/sucrose nonfermenting 3A
Curator
Summary (TAIR10)
Homologous to yeast SWI3 and a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3C, the other two members of the SWI3 family.
Computational
Description (TAIR10)
SWITCH/sucrose nonfermenting 3A (SWI3A); FUNCTIONS IN: DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: SWI/SNF complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: SWITCH/sucrose nonfermenting 3C (TAIR:AT1G21700.1); Has 887 Blast hits to 703 proteins in 193 species: Archae - 0; Bacteria - 3; Metazoa - 393; Fungi - 212; Plants - 178; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
Protein Annotations
BioGrid:4710eggNOG:COG5259eggNOG:KOG1279EMBL:AC002535EMBL:AY062794EMBL:AY081570EMBL:CP002685
EnsemblPlants:AT2G47620EnsemblPlants:AT2G47620.1entrez:819375Gene3D:1.10.10.10Gene3D:1.10.10.60GeneID:819375Genevisible:Q8W475
GO:GO:0003677GO:GO:0006338GO:GO:0006351GO:GO:0006355GO:GO:0007275GO:GO:0016514Gramene:AT2G47620.1
hmmpanther:PTHR12802hmmpanther:PTHR12802:SF2HOGENOM:HOG000083881InParanoid:Q8W475IntAct:Q8W475InterPro:IPR001005InterPro:IPR007526
InterPro:IPR009057InterPro:IPR011991InterPro:IPR017884InterPro:IPR032451KEGG:ath:AT2G47620KO:K11649ncoils:Coil
OMA:FKNGNYGPaxDb:Q8W475Pfam:PF00249Pfam:PF04433Pfam:PF16495Pfam:Q8W475Pfscan:PS50934
Pfscan:PS51293PhylomeDB:Q8W475PIR:T00422PRIDE:Q8W475PRO:PR:Q8W475PROSITE:PS50934PROSITE:PS51293
ProteinModelPortal:Q8W475Proteomes:UP000006548RefSeq:NP_850476.1SMART:SM00717SMR:Q8W475STRING:3702.AT2G47620.1SUPFAM:SSF46689
TAIR:AT2G47620tair10-symbols:ATSWI3Atair10-symbols:CHB1tair10-symbols:SWI3AUniGene:At.27229UniProt:Q8W475
Coordinates (TAIR10) chr2:+:19532034..19534251
Molecular Weight (calculated) 57487.70 Da
IEP (calculated) 4.53
GRAVY (calculated) -0.45
Length 512 amino acids
Sequence (TAIR10)
(BLAST)
001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)