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AT2G45690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : shrunken seed protein (SSE1)
Curator
Summary (TAIR10)
Encodes a protein with similarity to yeast Pep16p, a membrane localized protein involved in peroxisome assembly and protein-trafficking. SSE1 mutant seeds do not accumulate oils and dessicated seeds have a shrunken appearance. Involved in protein and oil body biogenesis. SSE is expressed during seed development, reaching the highest peak in mature siliques. Expression in leaves and roots is low compared to cotyledons and flowers. Located in peroxisomes and endoplasmic reticulum. Homologous to the peroxin PEX16 and complements the pex16 mutants of the yeast Yarrowia lipolytica.
Computational
Description (TAIR10)
SHRUNKEN SEED 1 (SSE1); CONTAINS InterPro DOMAIN/s: Peroxisome membrane protein, Pex16 (InterPro:IPR013919); Has 261 Blast hits to 259 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 93; Plants - 47; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
BioGrid:4513eggNOG:ENOG4111GEAeggNOG:KOG4546EMBL:AC003680EMBL:AF085354EMBL:AK175396EMBL:AK175414
EMBL:CP002685EnsemblPlants:AT2G45690EnsemblPlants:AT2G45690.1entrez:819177GeneID:819177Genevisible:Q8S8S1GO:GO:0005777
GO:GO:0005778GO:GO:0005789GO:GO:0006633GO:GO:0007031GO:GO:0016021Gramene:AT2G45690.1hmmpanther:PTHR13299
hmmpanther:PTHR13299:SF0HOGENOM:HOG000070549InParanoid:Q8S8S1InterPro:IPR013919KEGG:ath:AT2G45690KO:K13335OMA:ANGLTWI
PaxDb:Q8S8S1Pfam:PF08610Pfam:Q8S8S1PhylomeDB:Q8S8S1PRIDE:Q8S8S1PRO:PR:Q8S8S1Proteomes:UP000006548
RefSeq:NP_566053.1STRING:3702.AT2G45690.1TAIR:AT2G45690tair10-symbols:ATPEX16tair10-symbols:PEX16tair10-symbols:SSEtair10-symbols:SSE1
TCDB:9.A.17.1.3UniGene:At.11245UniProt:Q8S8S1
Coordinates (TAIR10) chr2:-:18823465..18825601
Molecular Weight (calculated) 41612.90 Da
IEP (calculated) 9.87
GRAVY (calculated) -0.38
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAYKQWVWR NREYVQSFGS FANGLTWLLP EKFSASEIGP EAVTAFLGIF STINEHIIEN APTPRGHVGS SGNDPSLSYP LLIAILKDLE TVVEVAAEHF
101: YGDKKWNYII LTEAMKAVIR LALFRNSGYK MLLQGGETPN EEKDSNQSES QNRAGNSGRN LGPHGLGNQN HHNPWNLEGR AMSALSSFGQ NARTTTSSTP
201: GWSRRIQHQQ AVIEPPMIKE RRRTMSELLT EKGVNGALFA IGEVLYITRP LIYVLFIRKY GVRSWIPWAI SLSVDTLGMG LLANSKWWGE KSKQVHFSGP
301: EKDELRRRKL IWALYLMRDP FFTKYTRQKL ESSQKKLELI PLIGFLTEKI VELLEGAQSR YTYISGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)