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AT2G41350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21750235 (2011): nucleus nuclear matrix
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21980.1); Has 188 Blast hits to 188 proteins in 66 species: Archae - 0; Bacteria - 12; Metazoa - 90; Fungi - 15; Plants - 54; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEUKeggNOG:ENOG4111SPAEMBL:AC005662EMBL:AY075602EMBL:AY084814EMBL:AY143923EMBL:BT015461
EMBL:CP002685EnsemblPlants:AT2G41350EnsemblPlants:AT2G41350.1EnsemblPlants:AT2G41350.2entrez:818733ExpressionAtlas:F4IK01GeneID:818733
Genevisible:F4IK01GO:GO:0005819GO:GO:0005874GO:GO:0007067GO:GO:0009524GO:GO:0051225GO:GO:0051301
GO:GO:0070652hmmpanther:PTHR31570HOGENOM:HOG000272683InParanoid:F4IK01IntAct:F4IK01InterPro:IPR026243KEGG:ath:AT2G41350
KO:K16584OMA:PQYEVNAPaxDb:F4IK01PhylomeDB:F4IK01PIR:F84840PRIDE:F4IK01PRINTS:PR02087
ProteinModelPortal:F4IK01Proteomes:UP000006548RefSeq:NP_001031524.1RefSeq:NP_565949.1STRING:3702.AT2G41350.2TAIR:AT2G41350UniGene:At.42845
UniProt:Q9ZVC0
Coordinates (TAIR10) chr2:+:17231565..17233458
Molecular Weight (calculated) 33495.80 Da
IEP (calculated) 5.54
GRAVY (calculated) -0.46
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDVTGDLAA VSEAKGGSDA ARISEVKAWL TSQFEAVGKE VPNFEYTHRS ITHLYNLATA SQAKSQAATI VANDFRLKAS EYRAQAARIR EILESAGMSQ
101: ESLPSNVVSS AQVLANVANL LNIRDTELSS FLVAMGDISL RKTGVEEKRA KAQKESNALL DYTRKAIQRL TYLKKILAQL EDDVVPCESQ MENWKTNLEV
201: MAVKEEQYIQ QYKKYEMLLN RVGYTPKISH RELVEMAEHR KELDKMTKPV LDTLRSYQDL PPDKALAALA IEDKKRQFTA AEKYLEEVLQ SALETNDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)