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AT2G39140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pseudouridine synthase family protein
Curator
Summary (TAIR10)
Suppressor of var2 variegation phenotype. Chloroplast localized. Loss of function mutant has defects in chloroplast protein translation and rRNA processing. Similar in sequence to pseudouridine synthase proteins.
Computational
Description (TAIR10)
SUPPRESSOR OF VARIEGATION 1 (SVR1); CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), RNA-binding S4 (InterPro:IPR002942), Pseudouridine synthase, RsuA and RluB/E/F, conserved site (InterPro:IPR018496); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G43340.1); Has 12713 Blast hits to 12709 proteins in 2415 species: Archae - 0; Bacteria - 10639; Metazoa - 2; Fungi - 2; Plants - 70; Viruses - 0; Other Eukaryotes - 2000 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G39140-MONOMEReggNOG:COG1187eggNOG:ENOG410IYJTEMBL:AK117682EMBL:AY088622EMBL:CP002685EnsemblPlants:AT2G39140
EnsemblPlants:AT2G39140.1entrez:818500Gene3D:3.10.290.10GeneID:818500GO:GO:0000455GO:GO:0000488GO:GO:0000489
GO:GO:0003723GO:GO:0009501GO:GO:0009507GO:GO:0009982GO:GO:0032544Gramene:AT2G39140.1hmmpanther:PTHR21600
hmmpanther:PTHR21600:SF11HOGENOM:HOG000044954InterPro:IPR002942InterPro:IPR006145InterPro:IPR018496InterPro:IPR020103KEGG:ath:AT2G39140
OMA:PLEDGMAPfam:PF00849Pfam:PF01479Pfscan:PS50889PhylomeDB:Q8L960PROSITE:PS01149PROSITE:PS50889
Proteomes:UP000006548RefSeq:NP_181447.2scanprosite:PS01149SMART:SM00363SMR:Q8L960STRING:3702.AT2G39140.1SUPFAM:SSF55120
SUPFAM:SSF55174TAIR:AT2G39140tair10-symbols:SVR1UniGene:At.26912UniGene:At.66439UniProt:Q8L960
Coordinates (TAIR10) chr2:+:16330238..16333153
Molecular Weight (calculated) 45110.30 Da
IEP (calculated) 10.64
GRAVY (calculated) -0.42
Length 410 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVAASSSI SFAASFLKIK AFPLSPRFFP IRTLRCSVSS SSSEPIEFDI SFAPPKPKPS STHGGVTPQQ LFIPWIVRSD DGTLKLQSQP PARLIHNLAI
101: DATTQNPKKK DKSKKKQPQA TSSSSATTTA SSPASHSEVK PKLSKAARRF YNENFKEQPQ RLSKVLAAAG VASRRTSEEL IFDGKVTVNG ILCNTPQTRV
201: DPSRDIIYVN GNRIPKKLPP KVYFALNKPK GYICSSGEKE IKSAISLFDE YLSSWDKRNP GTPKPRLFTV GRLDVATTGL IVVTNDGDFA QKLSHPSSSL
301: PKEYITTVVG DIHKRHLMAI SEGTMVEGVH CVPDSVELMP KQHDIPRARL RIVVHEGRNH EVRELVKNAG LEVHSLKRVR IGGFRLPSDL GLGKHVELKQ
401: SELKALGWKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)