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AT2G38280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.919
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AMP deaminase, putative / myoadenylate deaminase, putative
Curator
Summary (TAIR10)
Encodes a protein with in vitro AMP deaminase activity that is involved in embryogenesis. Homozygous mutant embryos fail to develop past the zygote stage.
Computational
Description (TAIR10)
EMBRYONIC FACTOR1 (FAC1); FUNCTIONS IN: AMP deaminase activity; INVOLVED IN: purine ribonucleoside monophosphate biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: cytosol, nucleus, microsome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenosine/AMP deaminase (InterPro:IPR001365), Adenosine/AMP deaminase active site (InterPro:IPR006650), AMP deaminase (InterPro:IPR006329); Has 1191 Blast hits to 1128 proteins in 362 species: Archae - 0; Bacteria - 226; Metazoa - 390; Fungi - 271; Plants - 78; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).
Protein Annotations
BindingDB:O80452BioCyc:ARA:AT2G38280-MONOMERBioCyc:ARA:GQT-2641-MONOMERBioGrid:3750BRENDA:3.5.4.6ChEMBL:CHEMBL2366458EC:3.5.4.6
eggNOG:COG1816eggNOG:KOG1096EMBL:AC003028EMBL:AK221552EMBL:AK316943EMBL:AY056301EMBL:AY133852
EMBL:CP002685EnsemblPlants:AT2G38280EnsemblPlants:AT2G38280.1EnsemblPlants:AT2G38280.2entrez:818408EvolutionaryTrace:O80452GeneID:818408
Genevisible:O80452GO:GO:0003876GO:GO:0005524GO:GO:0005634GO:GO:0005783GO:GO:0005829GO:GO:0009737
GO:GO:0009793GO:GO:0031307GO:GO:0032264GO:GO:0043231GO:GO:0043424GO:GO:0046872Gramene:AT2G38280.1
Gramene:AT2G38280.2gramene_pathway:3.5.4.6gramene_pathway:PWY-6596hmmpanther:PTHR11359hmmpanther:PTHR11359:SF8HOGENOM:HOG000092200InParanoid:O80452
IntAct:O80452InterPro:IPR001365InterPro:IPR006329InterPro:IPR006650InterPro:IPR032466iPTMnet:O80452KEGG:00230+3.5.4.6
KEGG:ath:AT2G38280KO:K01490OMA:YPQGKSDPANTHER:PTHR11359PaxDb:O80452PDB:2A3LPDBsum:2A3L
Pfam:O80452Pfam:PF00962PhylomeDB:O80452PIR:T01259PRIDE:O80452PRO:PR:O80452PROSITE:PS00485
ProteinModelPortal:O80452Proteomes:UP000006548Reactome:R-ATH-74217RefSeq:NP_565886.1RefSeq:NP_850294.1SABIO-RK:O80452scanprosite:PS00485
SMR:O80452STRING:3702.AT2G38280.1SUPFAM:SSF51556TAIR:AT2G38280tair10-symbols:ATAMPDtair10-symbols:FAC1TIGRfam:TIGR01429
TIGRFAMs:TIGR01429TMHMM:TMhelixUniGene:At.12466UniPathway:UPA00591UniProt:O80452
Coordinates (TAIR10) chr2:-:16033767..16038793
Molecular Weight (calculated) 95134.60 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.41
Length 839 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPNIYQLAL AALFGASFVA VSGFFMHFKA LNLVLERGKE RKENPDGDEP QNPTLVRRRS QVRRKVNDQY GRSPASLPDA TPFTDGGGGG GGDTGRSNGH
101: VYVDEIPPGL PRLHTPSEGR ASVHGASSIR KTGSFVRPIS PKSPVASASA FESVEESDDD DNLTNSEGLD ASYLQANGDN EMPADANEEQ ISMAASSMIR
201: SHSVSGDLHG VQPDPIAADI LRKEPEQETF VRLNVPLEVP TSDEVEAYKC LQECLELRKR YVFQETVAPW EKEVISDPST PKPNTEPFAH YPQGKSDHCF
301: EMQDGVVHVF ANKDAKEDLF PVADATAFFT DLHHVLKVIA AGNIRTLCHR RLVLLEQKFN LHLMLNADKE FLAQKSAPHR DFYNVRKVDT HVHHSACMNQ
401: KHLLRFIKSK LRKEPDEVVI FRDGTYLTLR EVFESLDLTG YDLNVDLLDV HADKSTFHRF DKFNLKYNPC GQSRLREIFL KQDNLIQGRF LGEITKQVFS
501: DLEASKYQMA EYRISIYGRK MSEWDQLASW IVNNDLYSEN VVWLIQLPRL YNIYKDMGIV TSFQNILDNI FIPLFEATVD PDSHPQLHVF LKQVVGFDLV
601: DDESKPERRP TKHMPTPAQW TNAFNPAFSY YVYYCYANLY VLNKLRESKG MTTITLRPHS GEAGDIDHLA ATFLTCHSIA HGINLRKSPV LQYLYYLAQI
701: GLAMSPLSNN SLFLDYHRNP FPVFFLRGLN VSLSTDDPLQ IHLTKEPLVE EYSIAASVWK LSACDLCEIA RNSVYQSGFS HALKSHWIGK DYYKRGPDGN
801: DIHKTNVPHI RVEFRDTIWK EEMQQVYLGK AVISDEVVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)