suba logo
AT2G37920.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : copper ion transmembrane transporters
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1513 (emb1513); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G07750.1); Has 60 Blast hits to 60 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IP8QeggNOG:ENOG410YVP1EMBL:AY084504EMBL:CP002685EnsemblPlants:AT2G37920EnsemblPlants:AT2G37920.1entrez:818368
GeneID:818368GO:GO:0016021Gramene:AT2G37920.1hmmpanther:PTHR37724hmmpanther:PTHR37724:SF1HOGENOM:HOG000090693KEGG:ath:AT2G37920
OMA:CADEQVKPhylomeDB:Q8LG21Proteomes:UP000006548RefSeq:NP_565874.1TAIR:AT2G37920tair10-symbols:emb1513UniGene:At.37355
UniGene:At.37356UniProt:Q8LG21
Coordinates (TAIR10) chr2:-:15869269..15870024
Molecular Weight (calculated) 28218.70 Da
IEP (calculated) 10.68
GRAVY (calculated) -0.81
Length 251 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATMIGINL SCFKSTSFFS PDLNSLQSKL SLLSLKPSPT QPRKSTVIRM GGGPRTFPGG VSKWQWKRMQ AKKQKQLLKA RLCRERQIYE MRKRAELKAA
101: VAELERPWEP IHKPPNLFSV CADEQVKVLA DRFQKPGGFD LWTDRDGPQL FESVDDLPSA RFFPKGVVHS VKPYGRLSSS SVVDDGDESE VKDEEIGKKL
201: RGRRVRKRGD DGGKRRTENR GNGGRLRNGG SSSSQVYDMT LQNDGRYEIG S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)