suba logo
AT2G30410.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.503
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tubulin folding cofactor A (KIESEL)
Curator
Summary (TAIR10)
mutant has embryo defect; enlarged embryo cells and endosperm nuclei; Tubulin Folding Cofactor A
Computational
Description (TAIR10)
KIESEL (KIS); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: tubulin complex assembly, cytokinesis; LOCATED IN: microtubule; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tubulin binding cofactor A (InterPro:IPR004226); Has 359 Blast hits to 359 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 92; Plants - 60; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Protein Annotations
BioGrid:2941eggNOG:ENOG4111Y9AeggNOG:KOG3470EMBL:AC002338EMBL:AF486848EMBL:AY050952EMBL:AY085814
EMBL:AY091344EMBL:CP002685EMBL:U93215EnsemblPlants:AT2G30410EnsemblPlants:AT2G30410.1EnsemblPlants:AT2G30410.2entrez:817592
EvolutionaryTrace:O04350GeneID:817592Genevisible:O04350GO:GO:0005829GO:GO:0007021GO:GO:0007023Gramene:AT2G30410.1
Gramene:AT2G30410.2hmmpanther:PTHR21500hmmpanther:PTHR21500:SF0HOGENOM:HOG000213817InParanoid:O04350IntAct:O04350InterPro:IPR004226
KEGG:ath:AT2G30410KO:K17292MINT:MINT-7968859ncoils:CoilOMA:KTGTCKRPANTHER:PTHR21500:SF0PaxDb:O04350
PDB:3MXZPDBsum:3MXZPfam:O04350Pfam:PF02970PhylomeDB:O04350PIR:B84708PRIDE:O04350
PRO:PR:O04350ProDom:PD010430ProteinModelPortal:O04350Proteomes:UP000006548RefSeq:NP_001189640.1RefSeq:NP_565699.1SMR:O04350
STRING:3702.AT2G30410.1SUPFAM:SSF46988TAIR:AT2G30410tair10-symbols:KIStair10-symbols:TFCAUniGene:At.23965UniProt:O04350
Coordinates (TAIR10) chr2:+:12959812..12960552
Molecular Weight (calculated) 12825.20 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.94
Length 113 amino acids
Sequence (TAIR10)
(BLAST)
001: MATIRNLKIK TSTCKRIVKE LHSYEKEVER EAAKTADMKD KGADPYDLKQ QENVLGESRM MIPDCHKRLE SALADLKSTL AELEETDEKE GPEIEDAKKT
101: VADVEKQFPT EDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)