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AT2G27170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Structural maintenance of chromosomes (SMC) family protein
Curator
Summary (TAIR10)
Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.
Computational
Description (TAIR10)
TITAN7 (TTN7); FUNCTIONS IN: ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: cohesin complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 2 (TAIR:AT5G62410.1); Has 158776 Blast hits to 77347 proteins in 3496 species: Archae - 2059; Bacteria - 28403; Metazoa - 67946; Fungi - 11949; Plants - 6773; Viruses - 706; Other Eukaryotes - 40940 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1196eggNOG:KOG0964EMBL:AC007154EMBL:AC007290EMBL:AJ504805EMBL:AK220965EMBL:AK221283
EMBL:AK226305EMBL:AK229499EMBL:AY525642EMBL:CP002685EnsemblPlants:AT2G27170EnsemblPlants:AT2G27170.1EnsemblPlants:AT2G27170.2
entrez:817259Gene3D:3.40.50.300GeneID:817259Genevisible:Q56YN8GO:GO:0000775GO:GO:0000785GO:GO:0003682
GO:GO:0005524GO:GO:0005634GO:GO:0005737GO:GO:0005819GO:GO:0006281GO:GO:0007059GO:GO:0007062
GO:GO:0007064GO:GO:0008278GO:GO:0008280GO:GO:0009506GO:GO:0016363GO:GO:0051301GO:GO:0051321
Gramene:AT2G27170.1Gramene:AT2G27170.2hmmpanther:PTHR18937hmmpanther:PTHR18937:SF8HOGENOM:HOG000166512InParanoid:Q56YN8InterPro:IPR003395
InterPro:IPR010935InterPro:IPR024704InterPro:IPR027417InterPro:IPR029685iPTMnet:Q56YN8KEGG:ath:AT2G27170KO:K06669
ncoils:CoilOMA:KWTTKENPANTHER:PTHR18937:SF8PaxDb:Q56YN8Pfam:PF02463Pfam:PF06470Pfam:Q56YN8
PhylomeDB:Q56YN8PIR:F84669PIRSF:PIRSF005719PRIDE:Q56YN8PRO:PR:Q56YN8ProteinModelPortal:Q56YN8Proteomes:UP000006548
Reactome:R-ATH-2468052Reactome:R-ATH-2470946RefSeq:NP_001077968.1RefSeq:NP_180285.4SMART:SM00968SMR:Q56YN8STRING:3702.AT2G27170.1
SUPFAM:0038317SUPFAM:SSF52540SUPFAM:SSF75553TAIR:AT2G27170tair10-symbols:SMC3tair10-symbols:TTN7UniGene:At.28786
UniProt:Q56YN8
Coordinates (TAIR10) chr2:-:11609319..11617064
Molecular Weight (calculated) 139379.00 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.81
Length 1204 amino acids
Sequence (TAIR10)
(BLAST)
0001: MFIKQVIIEG FKSYKEQVAT EEFSNKVNCV VGANGSGKSN FFHAIRFVLS DIYQNLRSED RHALLHEGAG HQVVSAFVEI VFDNSDNRFP VDKEEIRLRR
0101: TVGLKKDDYF LDGKHITKGE VMNLLESAGF SRANPYYVVQ QGKIASLTLM KDIERLDLLK EIGGTRVYEE RRRESLRIMQ ETGNKRKQII EVVHYLDERL
0201: RELDEEKEEL RKYQQLDKQR KSLEYTIYDK ELHDAREKLE QVEVARTKAS EESTKMYDRV EKAQDDSKSL DESLKELTKE LQTLYKEKET VEAQQTKALK
0301: KKTKLELDVK DFQDRITGNI QSKNDALEQL NTVEREMQDS LRELEAIKPL YESQVDKENQ TSKRINELEK TLSILYQKQG RATQFSNKAA RDKWLRKEIE
0401: DLKRVLDSNT VQEQKLQDEI LRLNTDLTER DEHIKKHEVE IGELESRISK SHELFNTKKR ERDEEQRKRK EKWGEESQLS SEIDKLKTEL ERAKKNLDHA
0501: TPGDVRRGLN SIRRICADYR INGVFGPLVE LVDCDEKFFT AVEVTAGNSL FNVVVENDDI STKIIRHLNS LKGGRVTFLP LNRIKAPRVN YPKDSDAIPL
0601: LKKLKFDSKF EPALGQVFGR TVVCRDLNVA TRVAKNDDLD CITMEGDQVS RKGGMTGGFY DHRRSKLRFM NIIMQNTKSI NEKEKELEDV RRQLQVIDQQ
0701: ITQLVTEQQR LEADWTLCKL QVEQLKQEIA NANKQKHAIH KAIEYKEKLL GDIRTRIDQV RSSMSMKEAE MGTELVDHLT PEEREQLSKL NPEIKDLKEK
0801: KFAYQADRIE RETRKAELEA NIATNLKRRI TELQATIASI DDDSLPSSAG TKEQELDDAK LSVNEAAKEL KSVCDSIDEK TKQIKKIKDE KAKLKTLEDD
0901: CKGTLQDLDK KLEELFSLRN TLLAKQDEYT KKIRGLGPLS SDAFDTYKRK NIKELQKMLH RCSEQLQQFS HVNKKALDQY VNFTEQREEL QNRQAELDAG
1001: DEKIKELITV LDQRKDESIE RTFKGVAHHF RDVFSELVQD GYGNLIIMKK KDLDNDDEDD DDDDGGREAV TEGRVEKYIG VKVKVSFTGQ GETQLMKQLS
1101: GGQKTVVALA LIFAIQRCDP APFYLFDEID AALDPQYRTA VGNLIRRLAD DYGTQFITTT FRPELVRVAD KIYGVFHKNR VSIVNVISKD QALDFIEKDQ
1201: SHDT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)