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AT2G02150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.773
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G05670.2); Has 63152 Blast hits to 15060 proteins in 311 species: Archae - 5; Bacteria - 73; Metazoa - 914; Fungi - 1071; Plants - 58741; Viruses - 0; Other Eukaryotes - 2348 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC005936EMBL:CP002685EnsemblPlants:AT2G02150EnsemblPlants:AT2G02150.1entrez:814746
Gene3D:1.25.40.10GeneID:814746Gramene:AT2G02150.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF329HOGENOM:HOG000241911InParanoid:P0C894
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT2G02150KO:K17710OMA:PSTAHACPaxDb:P0C894Pfam:P0C894
Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfscan:PS51375PhylomeDB:P0C894PIR:E84433PRIDE:P0C894
PRO:PR:P0C894PROSITE:PS51375ProteinModelPortal:P0C894Proteomes:UP000006548RefSeq:NP_178323.3SMR:P0C894STRING:3702.AT2G02150.1
SUPFAM:SSF81901TAIR:AT2G02150TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.41514UniGene:At.75294UniProt:P0C894
Coordinates (TAIR10) chr2:-:550340..552625
Molecular Weight (calculated) 86089.80 Da
IEP (calculated) 5.60
GRAVY (calculated) 0.02
Length 761 amino acids
Sequence (TAIR10)
(BLAST)
001: MFCSLRNFLH VNRRFPRHVS PSSSSLSQIQ SPLCFPLSSP SPSQSSFISC PFVWFTSFLC IIRYPFVTKS GTSTYSEDFD RDWIRKVVHN DLWDDPGLEK
101: LFDLTLAPIW VPRVLVELKE DPKLAFKFFK WSMTRNGFKH SVESYCIVAH ILFCARMYYD ANSVLKEMVL SKADCDVFDV LWSTRNVCVP GFGVFDALFS
201: VLIDLGMLEE AIQCFSKMKR FRVFPKTRSC NGLLHRFAKL GKTDDVKRFF KDMIGAGARP TVFTYNIMID CMCKEGDVEA ARGLFEEMKF RGLVPDTVTY
301: NSMIDGFGKV GRLDDTVCFF EEMKDMCCEP DVITYNALIN CFCKFGKLPI GLEFYREMKG NGLKPNVVSY STLVDAFCKE GMMQQAIKFY VDMRRVGLVP
401: NEYTYTSLID ANCKIGNLSD AFRLGNEMLQ VGVEWNVVTY TALIDGLCDA ERMKEAEELF GKMDTAGVIP NLASYNALIH GFVKAKNMDR ALELLNELKG
501: RGIKPDLLLY GTFIWGLCSL EKIEAAKVVM NEMKECGIKA NSLIYTTLMD AYFKSGNPTE GLHLLDEMKE LDIEVTVVTF CVLIDGLCKN KLVSKAVDYF
601: NRISNDFGLQ ANAAIFTAMI DGLCKDNQVE AATTLFEQMV QKGLVPDRTA YTSLMDGNFK QGNVLEALAL RDKMAEIGMK LDLLAYTSLV WGLSHCNQLQ
701: KARSFLEEMI GEGIHPDEVL CISVLKKHYE LGCIDEAVEL QSYLMKHQLL TSDNDNALPN M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)