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AT2G01390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
DNASU:814667eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC005560EMBL:AC006200EMBL:BT012081EMBL:CP002685
EnsemblPlants:AT2G01390EnsemblPlants:AT2G01390.1entrez:814667Gene3D:1.25.40.10GeneID:814667Genevisible:Q9ZU29Gramene:AT2G01390.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF600HOGENOM:HOG000084833InParanoid:Q9ZU29InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT2G01390
OMA:DQFTYTTPaxDb:Q9ZU29Pfam:PF01535Pfam:PF13041Pfam:PF13812Pfam:Q9ZU29Pfscan:PS51375
PhylomeDB:Q9ZU29PIR:A84424PIR:B84424PRIDE:Q9ZU29PRO:PR:Q9ZU29PROSITE:PS51375ProteinModelPortal:Q9ZU29
Proteomes:UP000006548RefSeq:NP_178248.2SMR:Q9ZU29STRING:3702.AT2G01390.1TAIR:AT2G01390TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.51298UniProt:Q9ZU29
Coordinates (TAIR10) chr2:+:172256..174137
Molecular Weight (calculated) 65606.50 Da
IEP (calculated) 7.78
GRAVY (calculated) -0.16
Length 577 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFSSIFRNT PIQFSNRRSS VKLLHSLPRL KPTNSKRFSQ KPKLVKTQTL PDPSVYTRDI VSNIYNILKY SNWDSAQEQL PHLGVRWDSH IINRVLKAHP
101: PMQKAWLFFN WAAQIKGFKH DHFTYTTMLD IFGEAGRIQS MYSVFHLMKE KGVLIDTVTY TSLIHWVSSS GDVDGAMRLW EEMRDNGCEP TVVSYTAYMK
201: MLFADGRVEE ATEVYKEMLR SRVSPNCHTY TVLMEYLVAT GKCEEALDIF FKMQEIGVQP DKAACNILIA KALKFGETSF MTRVLVYMKE NGVVLRYPIF
301: VEALETLKAA GESDDLLREV NSHISVESLC SSDIDETPTA EVNDTKNSDD SRVISSVLLM KQNLVAVDIL LNQMRDRNIK LDSFVVSAII ETNCDRCRTE
401: GASLAFDYSL EMGIHLKKSA YLALIGNFLR SNELPKVIEV VKEMVKAQHS LGCYQGAMLI HRLGFGRRPR LAADVFDLLP DDQKGVAAYT ALMDVYISAG
501: SPEKAMKILR EMREREIMPS LGTYDVLLSG LEKTSDFQKE VALLRKEKKS LVASARFREN VHVEDKICDL LFATNLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)