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AT1G67320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA primase, large subunit family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238); Has 451 Blast hits to 447 proteins in 212 species: Archae - 8; Bacteria - 0; Metazoa - 155; Fungi - 145; Plants - 53; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
Protein Annotations
DNASU:843052EMBL:CP002684EnsemblPlants:AT1G67320EnsemblPlants:AT1G67320.1entrez:843052ExpressionAtlas:F4HRU7GeneID:843052
GO:GO:0003896GO:GO:0046872GO:GO:0051539Gramene:AT1G67320.1hmmpanther:PTHR10537hmmpanther:PTHR10537:SF3InterPro:IPR007238
InterPro:IPR016558Pfam:PF04104PIRSF:PIRSF009449PRIDE:F4HRU7ProteinModelPortal:F4HRU7Proteomes:UP000006548RefSeq:NP_564893.2
SMR:F4HRU7TAIR:AT1G67320UniGene:At.73934UniProt:F4HRU7
Coordinates (TAIR10) chr1:-:25205520..25208966
Molecular Weight (calculated) 51622.00 Da
IEP (calculated) 8.85
GRAVY (calculated) -0.42
Length 449 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVIRSQKRT VSNDVVSTPT LPLYLTAPHM EVRLEEFELF AIDRLRVLKG VSDGLARARN PNEMDDLVET LWKEHMRLSN VSEMINKDII SHFVLRLVYC
101: RSDELKKWFL SMETALFRHR FRLKKIEEQR AIVGEFGLPY KAVIGAELES LKERLGLVAR SHGQISSDVE NIYYKVPFEE VPDLVASRRV LLQKGFAFVA
201: GTQLVSLVVT QFRSHLSKAL ILTNRKWTTT IREREKDRLT PIVEALSTSY LGPDYSQSNE YADISLKDID QVSKSSFPLC MRHLFEKLRE DHHLKHGGRM
301: QLGLFLKLDD ALAFWREEFT KKVGSERFDK EYAYAIRHNY GKEGKRTDYT PYACSKIITS APGAGDHHGC PYRHFSEDNL KAALSRMGLS SRGMEDVMDK
401: VRNRHYQLAC TLTFEAVYGT SCDTGINHPN QYFEESQKIL KSKTPAAPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)