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AT1G65360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 23
Curator
Summary (TAIR10)
Encodes AGL23, a Type I MADS-box gene that controls female gametophyte development and the biogenesis of organelles during embryo development.
Computational
Description (TAIR10)
AGAMOUS-like 23 (AGL23); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chloroplast organization, embryo sac development; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 28 (TAIR:AT1G01530.1); Has 5721 Blast hits to 5721 proteins in 690 species: Archae - 0; Bacteria - 0; Metazoa - 623; Fungi - 299; Plants - 4728; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AC004512EMBL:AY141230EMBL:CP002684EnsemblPlants:AT1G65360EnsemblPlants:AT1G65360.1
entrez:842846GeneID:842846Genevisible:O80807GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009553GO:GO:0009658Gramene:AT1G65360.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF230HOGENOM:HOG000238700InParanoid:O80807
IntAct:O80807InterPro:IPR002100KEGG:ath:AT1G65360ncoils:CoilOMA:DAKIAMIPaxDb:O80807Pfam:PF00319
Pfscan:PS50066PhylomeDB:O80807PIR:T02359PRINTS:PR00404PROSITE:PS50066ProteinModelPortal:O80807Proteomes:UP000006548
RefSeq:NP_176715.1SMART:SM00432SMR:O80807STRING:3702.AT1G65360.1SUPFAM:SSF55455TAIR:AT1G65360tair10-symbols:AGL23
UniGene:At.35891UniProt:O80807
Coordinates (TAIR10) chr1:+:24281337..24282151
Molecular Weight (calculated) 25338.30 Da
IEP (calculated) 9.67
GRAVY (calculated) -0.48
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKKTLGRRK VEIVKMTKES NLQVTFSKRK AGLFKKASEF CTLCDAKIAM IVFSPAGKVF SFGHPNVDVL LDHFRGCVVG HNNTNLDESY TKLHVQMLNK
101: SYTEVKAEVE KEQKNKQSRA QNERENENAE EWWSKSPLEL NLSQSTCMIR VLKDLKKIVD EKAIQLIHQT NPNFYVGSSS NAAAPATVSG GNISTNQGFF
201: DQNGMTTNPT QTLLFGFDIM NRTPGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)