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AT1G62360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : KNOX/ELK homeobox transcription factor
Curator
Summary (TAIR10)
Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.
Computational
Description (TAIR10)
SHOOT MERISTEMLESS (STM); CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED-like from Arabidopsis thaliana (TAIR:AT4G08150.1); Has 6066 Blast hits to 6064 proteins in 384 species: Archae - 0; Bacteria - 0; Metazoa - 1706; Fungi - 298; Plants - 3900; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).
Protein Annotations
BioGrid:27755eggNOG:ENOG410XPMQeggNOG:KOG0773EMBL:AC003113EMBL:AY080857EMBL:CP002684EMBL:U32344
EnsemblPlants:AT1G62360EnsemblPlants:AT1G62360.1entrez:842534Gene3D:1.10.10.60GeneID:842534Genevisible:Q38874GO:GO:0003700
GO:GO:0005634GO:GO:0009691GO:GO:0009934GO:GO:0019827GO:GO:0043565GO:GO:0048440Gramene:AT1G62360.1
hmmpanther:PTHR11850hmmpanther:PTHR11850:SF100HOGENOM:HOG000272741InParanoid:Q38874IntAct:Q38874InterPro:IPR001356InterPro:IPR005539
InterPro:IPR005540InterPro:IPR005541InterPro:IPR008422InterPro:IPR009057InterPro:IPR017970KEGG:ath:AT1G62360OMA:MDHISST
PaxDb:Q38874Pfam:PF03789Pfam:PF03790Pfam:PF03791Pfam:PF05920Pfam:Q38874Pfscan:PS50071
Pfscan:PS51213PhylomeDB:Q38874PIR:S68456PIR:T01446PRIDE:Q38874PRO:PR:Q38874PROSITE:PS00027
PROSITE:PS50071PROSITE:PS51213ProteinModelPortal:Q38874Proteomes:UP000006548RefSeq:NP_176426.1scanprosite:PS00027SMART:SM00389
SMART:SM01188SMART:SM01255SMART:SM01256SMR:Q38874STRING:3702.AT1G62360.1SUPFAM:SSF46689TAIR:AT1G62360
tair10-symbols:BUMtair10-symbols:BUM1tair10-symbols:SHLtair10-symbols:STMtair10-symbols:WAMtair10-symbols:WAM1UniGene:At.10801
UniProt:Q38874
Coordinates (TAIR10) chr1:-:23058796..23061722
Molecular Weight (calculated) 42755.40 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.65
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM PPIMTSHQHH GHDHQHQQQE HDGYAYQSHH QQSSSLFLQS LAPPQGTKNK VASSSSPSSC APAYSLMEIH
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)