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AT1G55350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : calpain-type cysteine protease family
Curator
Summary (TAIR10)
Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway.
Computational
Description (TAIR10)
DEFECTIVE KERNEL 1 (DEK1); FUNCTIONS IN: cysteine-type endopeptidase activity, calcium-dependent cysteine-type endopeptidase activity; INVOLVED IN: cell fate specification, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C2, calpain, domain III (InterPro:IPR022683), Peptidase C2, calpain, large subunit, domain III (InterPro:IPR022682), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Peptidase C2, calpain, catalytic domain (InterPro:IPR001300), Peptidase C2, calpain family (InterPro:IPR022684); Has 3377 Blast hits to 2425 proteins in 256 species: Archae - 0; Bacteria - 87; Metazoa - 1580; Fungi - 264; Plants - 115; Viruses - 0; Other Eukaryotes - 1331 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G55350-MONOMERBioCyc:ARA:GQT-1381-MONOMERBioCyc:ARA:GQT-1382-MONOMERBioCyc:ARA:GQT-1383-MONOMERBioCyc:ARA:GQT-1384-MONOMERBioGrid:27206EC:3.4.22.-
eggNOG:ENOG410XP0BeggNOG:KOG0045EMBL:AC027034EMBL:AY050822EMBL:AY061803EMBL:AY074514EMBL:CP002684
EnsemblPlants:AT1G55350EnsemblPlants:AT1G55350.1EnsemblPlants:AT1G55350.2EnsemblPlants:AT1G55350.3EnsemblPlants:AT1G55350.4entrez:841981ExpressionAtlas:Q8RVL2
Gene3D:2.60.120.200GeneID:841981Genevisible:Q8RVL2GO:GO:0001558GO:GO:0004198GO:GO:0005737GO:GO:0005789
GO:GO:0005887GO:GO:0008234GO:GO:0009793GO:GO:0009934GO:GO:0009957GO:GO:0010008GO:GO:0032877
GO:GO:0042127GO:GO:0090392GO:GO:0097264GO:GO:2000011GO:GO:2000014GO:GO:2000024hmmpanther:PTHR10183
hmmpanther:PTHR10183:SF267HOGENOM:HOG000030613IntAct:Q8RVL2InterPro:IPR000169InterPro:IPR001300InterPro:IPR013320InterPro:IPR022682
InterPro:IPR022683InterPro:IPR022684iPTMnet:Q8RVL2MEROPS:C02.019PaxDb:Q8RVL2Pfam:PF00648Pfam:PF01067
Pfam:Q8RVL2Pfscan:PS50203PhylomeDB:Q8RVL2PIR:G96595PRIDE:Q8RVL2PRINTS:PR00704PRO:PR:Q8RVL2
PROSITE:PS00139PROSITE:PS50203ProteinModelPortal:Q8RVL2Proteomes:UP000006548RefSeq:NP_175932.2RefSeq:NP_850965.1RefSeq:NP_850966.1
RefSeq:NP_850967.1scanprosite:PS00139SMART:SM00230SMART:SM00720STRING:3702.AT1G55350.5SUPFAM:SSF49758SUPFAM:SSF49899
SUPFAM:SSF54001TAIR:AT1G55350tair10-symbols:ATDEK1tair10-symbols:DEK1tair10-symbols:EMB1275tair10-symbols:EMB80TMHMM:TMhelix
UniGene:At.17726UniProt:Q8RVL2
Coordinates (TAIR10) chr1:-:20654463..20664501
Molecular Weight (calculated) 238277.00 Da
IEP (calculated) 6.53
GRAVY (calculated) 0.06
Length 2151 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEGDERGVLL ACVISGTLFT VFGSGSFWIL WAVNWRPWRL YSWIFARKWP KVLQGPQLDI LCGVLSLFAW IVVVSPIAIL IGWGSWLIVI LDRHIIGLAI
0101: IMAGTALLLA FYSIMLWWRT QWQSSRAVAL LLLLGVALLC AYELCAVYVT AGAHASQQYS PSGFFFGVSA IALAINMLFI CRMVFNGNGL DVDEYVRRAY
0201: KFAYSDCIEV GPVACLPEPP DPNELYPRQT SRASHLGLLY LGSLVVLLAY SVLYGLTARE SRWLGGITSA AVIVLDWNIG ACLYGFKLLQ NRVLALFVAG
0301: ISRLFLICFG IHYWYLGHCI SYIFVASVLS GAAVSRHLSI TDPSAARRDA LQSTVIRLRE GFRRKEQNSS SSSSDGCGSS IKRSSSIDAG HTGCTNEANR
0401: TAESCTADNL TRTGSSQEGI NSDKSEESGR PSLGLRSSSC RSVVQEPEAG TSYFMDKVSD QNNTLVVCSS SGLDSQGYES STSNSANQQL LDMNLALAFQ
0501: DQLNNPRIAS ILKKKAKEGD LELTNLLQDK GLDPNFAVML KEKNLDPTIL ALLQRSSLDA DRDHRDNTDI TIIDSNSVDN TLPNQISLSE ELRLRGLEKW
0601: LKLSRLLLHH VAGTPERAWG LFSLVFILET IIVAIFRPKT ITIINSSHQQ FEFGFSVLLL SPVVCSIMAF LRSLQVEEMA LTSKSRKYGF VAWLLSTSVG
0701: LSLSFLSKSS VLLGISLTVP LMAACLSIAV PIWMHNGYQF WVPQLSCGDQ ARDLRSPRIK GFILWICVVL FAGSVISLGA IISAKPLDDL KYKLFSAREN
0801: NVTSPYTSSV YLGWAMSSGI ALVVTAILPI VSWFATYRFS HSSAVCLMIF SVVLVAFCGT SYLEVVKSRD DQLPTKGDFL AALLPLACIP ALLSLCCGMV
0901: KWKDDCWILS RGVYVFFSIG LLLLFGAIAA VIAVKPWTIG VSFLLVLFLM VVTIGVIHLW ASNNFYLTRK QTSFVCFLAL LLGLAAFLLG WHQDKAFAGA
1001: SVGYFTFLSL LAGRALAVLL SPPIVVYSPR VLPVYVYDAH ADCGKNVSAA FLVLYGIALA TEGWGVVASL IIYPPFAGAA VSAITLVVAF GFAVSRPCLT
1101: LEMMEVAVRF LSKDTIVQAI SRSATKTRNA LSGTYSAPQR SASSAALLVG DPSAMRDKAG NFVLPRDDVM KLRDRLRNEE RVAGSIFYKM QCRKGFRHEP
1201: PTNVDYRRDM CAHARVLALE EAIDTEWVYM WDKFGGYLLL LLGLTAKAER VQDEVRLRLF LDSIGFSDLS ARKISKWKPE DRRQFEIIQE SYLREKEMEE
1301: ESLMQRREEE GRGKERRKAL LEKEERKWKE IEASLIPSIP NAGSREAAAM AAAIRAVGGD SVLEDSFARE RVSGIARRIR TAQLERRAQQ TGISGAVCVL
1401: DDEPMISGKH CGQMDSSVCQ SQKISFSVTA MIQSDSGPVC LFGTEFQKKV CWEILVAGSE QGIEAGQVGL RLITKGERQT TVAREWYIGA TSITDGRWHT
1501: VTITIDADAG EATCYIDGGF DGYQNGLPLS IGSAIWEQGA EVWLGVRPPI DVDAFGRSDS DGVESKMHIM DVFLWGKCLS EEEAASLHAA IGMADLDMID
1601: LSDDNWQWTD SPPRVDGWDS DPADVDLYDR DDVDWDGQYS SGRKRRSGRD FVMSVDSFAR RHRKPRMETQ EDINQRMRSV ELAVKEALSA RGDKQFTDQE
1701: FPPNDRSLFV DTQNPPSKLQ VVSEWMRPDS IVKENGSDSR PCLFSGDANP SDVCQGRLGD CWFLSAVAVL TEVSRISEVI ITPEYNEEGI YTVRFCIQGE
1801: WVPVVIDDWI PCESPGKPAF ATSRKLNELW VSMVEKAYAK LHGSYEALEG GLVQDALVDL TGGAGEEIDL RSAQAQIDLA SGRLWSQLLR FKQEGFLLGA
1901: GSPSGSDVHV SSSGIVQGHA YSVLQVREVD GHRLVQIRNP WANEVEWNGP WSDSSPEWTD RMKHKLKHVP QSKEGIFWMS WQDFQIHFRS IYVCRVYPRE
2001: MRYSVNGQWR GYSAGGCQDY SSWHQNPQFR LRATGSDASL PIHVFITLTQ GVGFSRTTPG FRNYQSSHDS QLFYIGLRIL KTRGRRAAYN IFLHESVGGT
2101: DYVNSREISC EMVLDPDPKG YTIVPTTIHP GEEAPFVLSV FTKASIVLEA L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)