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AT1G49400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleic acid-binding, OB-fold-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1129 (emb1129); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, bacterial-type (InterPro:IPR019984), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT3G18880.1); Has 7577 Blast hits to 7577 proteins in 2675 species: Archae - 139; Bacteria - 5329; Metazoa - 53; Fungi - 85; Plants - 120; Viruses - 0; Other Eukaryotes - 1851 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0186eggNOG:KOG1740EMBL:AC007504EMBL:AK118089EMBL:BT005147EMBL:CP002684EnsemblPlants:AT1G49400
EnsemblPlants:AT1G49400.1entrez:841363Gene3D:2.40.50.140GeneID:841363GO:GO:0003735GO:GO:0005840GO:GO:0006412
Gramene:AT1G49400.1HAMAP:MF_01345_Bhmmpanther:PTHR10744HOGENOM:HOG000231339InterPro:IPR000266InterPro:IPR012340InterPro:IPR019984
KEGG:ath:AT1G49400KO:K02961OMA:VRIEACRPANTHER:PTHR10744Pfam:PF00366PhylomeDB:Q9XIA6PIR:D96530
PRINTS:PR00973ProDom:PD001295Proteomes:UP000006548RefSeq:NP_175365.1SMR:Q9XIA6STRING:3702.AT1G49400.1SUPFAM:SSF50249
TAIR:AT1G49400tair10-symbols:emb1129TIGRfam:TIGR03635TIGRFAMs:TIGR03635UniGene:At.38232UniProt:Q9XIA6
Coordinates (TAIR10) chr1:+:18283156..18283643
Molecular Weight (calculated) 12561.00 Da
IEP (calculated) 10.79
GRAVY (calculated) -0.36
Length 116 amino acids
Sequence (TAIR10)
(BLAST)
001: MKPVIGTVVS NKMQKSVVVA VDRLFHNKIY NRYVKRTSKF MAHDDKDACN IGDRVKLDPS RPLSKNKHWI VAEIIKKARI YSPKAAAAAV SASASASSAS
101: TTDSSAQSQI PPSSTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)