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AT1G08840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.982
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA replication helicase, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2411 (emb2411); FUNCTIONS IN: ATP-dependent DNA helicase activity, DNA binding, ATP binding; INVOLVED IN: DNA replication, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA helicase, UvrD/REP type (InterPro:IPR000212), DNA replication factor Dna2 (InterPro:IPR014808); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 6121 Blast hits to 5421 proteins in 1016 species: Archae - 240; Bacteria - 1986; Metazoa - 1238; Fungi - 1140; Plants - 545; Viruses - 30; Other Eukaryotes - 942 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1112eggNOG:KOG1805EMBL:CP002684EnsemblPlants:AT1G08840EnsemblPlants:AT1G08840.1entrez:837406ExpressionAtlas:F4HXR5
Gene3D:3.40.50.300GeneID:837406GO:GO:0017108GO:GO:0033567GO:GO:0043142Gramene:AT1G08840.1hmmpanther:PTHR10887
hmmpanther:PTHR10887:SF14InterPro:IPR014808InterPro:IPR026851InterPro:IPR027417PANTHER:PTHR10887:SF14PaxDb:F4HXR5Pfam:PF08696
Pfam:PF13086Pfam:PF13087PRIDE:F4HXR5ProteinModelPortal:F4HXR5Proteomes:UP000006548Reactome:R-ATH-174437Reactome:R-ATH-69166
RefSeq:NP_172361.1SMR:F4HXR5STRING:3702.AT1G08840.2SUPFAM:SSF52540TAIR:AT1G08840tair10-symbols:emb2411UniGene:At.51530
UniProt:F4HXR5
Coordinates (TAIR10) chr1:-:2829579..2838369
Molecular Weight (calculated) 143257.00 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.28
Length 1296 amino acids
Sequence (TAIR10)
(BLAST)
0001: MPPRKKPKSS ALKSNKQSSA NHSSQPSTFG IQQLFLRHIQ NSQSTSNSHT STADPVDQQN VNGLASDTAV LTPQNPLGTS NEKPDESKDM DQQLTEASPK
0101: ISKNLKRFSP GMLIKQSQDD CGGEITWKIS PVNERLRAAA KNIPKMMDLT ENSLGKQCPT SGITSKVEQW LSSPSKKASK RPAFATNRVM ERVNPSPDAE
0201: FEIVNTSSSG NSPFQTPPSL SCPHNKLPCT VTCSGACGSM GAGQHKKALL ELLDQVEDVI AVDDKTTDDV GIVMPQARVK DDIISSVVDC AVDEGPVSLP
0301: KMQNSINPDS YFLVLEVSEK RGSGSSSKGQ CPYKVLRLLD EHTGVECALY LWDEWFYSTV SPGDSINVIG EFDGDGKCDV DRQNNFLIVH PDTLVAGTRV
0401: AASFGCPRRT VLDERLRSNE HATVALLGTL QHQVFQAGLS QESPSVDGLQ EYASTVIEKS IESLYACGVH EGDVRSTLFK AIPKMLNWIE HFRYSKDSEV
0501: SKVDFGSTIG KKAVKVSEVI DIEEMSWAPK YGLKGMIDAS VRVIVESDMN TVNEKIMPLE FKSGKAPSGQ SSIEHSAQVI LYTLLMSERY LKHIDNGLLY
0601: YLQSDQTQGI SVQRSDLVGL IIRRNELAND ILVASTTQQL PPMLRADGGN TESSGLGDVF DTHVSHLSTL HFNFLRHWDR LIDLEGREMQ LLRKDIAHPH
0701: GSKGSHSASY LSSMVLDVTN GFQHHNSHKE TRFIYRFVRQ KSSESRERVT SEDMIRTGNL ATDDLDCKLR TGDRVILRTE VSHLTVANGI IADISRTHIS
0801: VSLSKRLRLP WSEPSSEVSN LSHELWRIYK DEFMTSFSVM RFNLMQLFVQ NGHNIRKMIV DLEPPRFDNG SILSQDPAIS YIWSEKSLNN DQRQAILKIL
0901: TAKDYALILG MPGTGKTSTM VHAVKALLIR GSSILLASYT NSAVDNLLIK LKAQGIEFLR IGRDEAVHEE VRESCFSAMN MCSVEDIKKK LDQVKVVAST
1001: CLGINSPLLV NRRFDVCIID EAGQIALPVS IGPLLFASTF VLVGDHYQLP PLVQSTEARE NGMGISLFRR LSEAHPQAIS VLQNQYRMCR GIMELSNALI
1101: YGDRLCCGSA EVADATLVLS TSSSTSPWLK KVLEPTRTVV FVNTDMLRAF EARDQNAINN PVEASIIAEI VEELVNNGVD SKDIGIITPY NSQASLIQHA
1201: IPTTPVEIHT IDKYQGRDKD CILVSFVRSR EKPRSSASSL LGDWHRINVA LTRAKKKLIM VGSQRTLSRV PLLMLLLNKV KEQSGILNLL PGDLKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)