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ATMG01120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:23761796 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:20197505 (2010): mitochondrion
  • PMID:18189341 (2008): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12837548 (2003): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : NADH dehydrogenase 1B
Curator
Summary (TAIR10)
Encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from three precursors, NAD1A, NAD1B, and NAD1C.
Computational
Description (TAIR10)
NADH dehydrogenase 1B (NAD1B); FUNCTIONS IN: NADH dehydrogenase activity; INVOLVED IN: oxidation reduction, cellular respiration, photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, subunit 1 (InterPro:IPR001694), NADH:ubiquinone oxidoreductase, subunit 1, conserved site (InterPro:IPR018086); BEST Arabidopsis thaliana protein match is: NADH dehydrogenase 1A (TAIR:ATMG01275.1).
Protein Annotations
EC:1.6.5.3eggNOG:COG1005eggNOG:KOG4770EMBL:Y08501
EnsemblPlants:ATMG00516.1EnsemblPlants:ATMG01120EnsemblPlants:ATMG01120.1EnsemblPlants:ATMG01275.1
entrez:2745467entrez:3890477GeneID:3890477GO:GO:0005739
GO:GO:0005886GO:GO:0008137GO:GO:0016021Gramene:ATMG00516.1
Gramene:ATMG01120.1Gramene:ATMG01275.1HAMAP:MF_01350hmmpanther:PTHR11432
hmmpanther:PTHR11432:SF3InParanoid:Q1ZXW0InterPro:IPR001694InterPro:IPR018086
KEGG:ath:ArthMp044KO:K03878OMA:IPVTIVWPANTHER:PTHR11432
PaxDb:Q1ZXW0Pfam:PF00146PRIDE:Q1ZXW0PROSITE:PS00668
ProteinModelPortal:Q1ZXW0Proteomes:UP000006548RefSeq:NP_085565.3scanprosite:PS00668
STRING:3702.ATMG01275.1TAIR:ATMG00516TAIR:ATMG01120TAIR:ATMG01275
tair10-symbols:NAD1tair10-symbols:NAD1BTMHMM:TMhelixUniGene:At.70399
UniProt:Q1ZXW0
Coordinates (TAIR10) chrM:-:287917..289083
Molecular Weight (calculated) 35677.80 Da
IEP (calculated) 9.70
GRAVY (calculated) 0.77
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: TYIAVPAEIL GIILPLLLGV AFLVLAERKV MAFVQRRKGP DVVGSFGLLQ PLADGSKLIL KEPISPSSAN FFLFRMAPVA TFMLSLVARA VVPFDYGMVL
101: SDPNIGLLYL FAISSLGVYG IIIAGRSSNS KYAFLGALRS AAQMVSYEVS IGLILITVLI CVGPRNSSEI VMAQKQIWSG IPLFPVLVMF LISRLAETNR
201: APFDLPEAEA ESVAGYNVEY SSMGSALFFL GEYANMILMS GPCTLFFPGG WPPILDLPIF KKIPGSIWFS IKVLLFLFLY IWVRAAFPRY RYDQLMGLGR
301: KVFLPLSLAR VVPVSGLLVT FQWLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)