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ATMG00220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : apocytochrome b
Curator
Summary (TAIR10)
Mitochondrial apocytochrome b (cob) gene encodes a subunit of the ubiquinol-cytochrome c oxidoreductase and is part of a 5 kb transcript. The transcript also contains a pseudogene for ribosomal protein S14 called RPS15 and a tRNA(Ser) gene. Both the Cob and RPS15 genes are edited in the transcript.
Computational
Description (TAIR10)
apocytochrome b (COB); FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: aerobic respiration; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cytochrome b/b6 (InterPro:IPR016175), Cytochrome b/b6, C-terminal (InterPro:IPR005798), Di-haem cytochrome, transmembrane (InterPro:IPR016174), Cytochrome b/b6, N-terminal (InterPro:IPR005797); BEST Arabidopsis thaliana protein match is: Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal (TAIR:AT2G07727.1).
Protein Annotations
BioCyc:ARA:ATMG00220-MONOMERBioCyc:ARA:MONOMER-8804BioGrid:789eggNOG:COG1290
eggNOG:KOG4663EMBL:AC006225EMBL:CP002685EMBL:JF729200
EMBL:JF729201EMBL:JF729202EMBL:X67736EMBL:Y08501
EnsemblPlants:AT2G07727.1EnsemblPlants:ATMG00220EnsemblPlants:ATMG00220.1entrez:814577
entrez:815400ExpressionAtlas:P42792Gene3D:1.20.810.10GeneID:814577
GeneID:815400Genevisible:P42792GO:GO:0005743GO:GO:0006122
GO:GO:0008121GO:GO:0009055GO:GO:0045275GO:GO:0046872
Gramene:AT2G07727.1Gramene:ATMG00220.1gramene_pathway:1.10.2.2gramene_pathway:PWY-3781
hmmpanther:PTHR19271hmmpanther:PTHR19271:SF5HOGENOM:HOG000255206InParanoid:P42792
IntAct:P42792InterPro:IPR005797InterPro:IPR005798InterPro:IPR016174
InterPro:IPR027387InterPro:IPR030689KEGG:ath:ArthMp020KEGG:ath:AT2G07727
KO:K00412MINT:MINT-4330425PaxDb:P42792Pfam:P42792
Pfam:PF00032Pfam:PF00033Pfam:PF13631Pfscan:PS51002
Pfscan:PS51003PhylomeDB:P42792PIR:S38960PIRSF:PIRSF038885
PRIDE:P42792PRO:PR:P42792PROSITE:PS51002PROSITE:PS51003
ProteinModelPortal:P42792Proteomes:UP000006548RefSeq:NP_085492.1RefSeq:NP_178804.1
SMR:P42792STRING:3702.ATMG00220.1SUPFAM:SSF81342SUPFAM:SSF81648
TAIR:ATMG00220tair10-symbols:COBTMHMM:TMhelixUniGene:At.70126
UniProt:A7KNF9UniProt:P42792
Coordinates (TAIR10) chrM:+:60235..61416
Molecular Weight (calculated) 44149.30 Da
IEP (calculated) 7.29
GRAVY (calculated) 0.60
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVY
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)