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ATCG00020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18433418 (2008): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : photosystem II reaction center protein A
Curator
Summary (TAIR10)
Encodes chlorophyll binding protein D1, a part of the photosystem II reaction center core
Computational
Description (TAIR10)
photosystem II reaction center protein A (PSBA); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II reaction centre protein PsbA/D1 (InterPro:IPR005867), Photosynthetic reaction centre, L/M (InterPro:IPR000484); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein D (TAIR:ATCG00270.1).
Protein Annotations
BioCyc:MetaCyc:ATCG00020-MONOMERBioGrid:29991EC:1.10.3.9eggNOG:ENOG410IHF0eggNOG:ENOG410XPX5EMBL:AP000423EMBL:X79898
EnsemblPlants:ATCG00020EnsemblPlants:ATCG00020.1entrez:844802Gene3D:1.20.85.10GeneID:844802Genevisible:P83755GO:GO:0009523
GO:GO:0009535GO:GO:0009635GO:GO:0009772GO:GO:0016021GO:GO:0016168GO:GO:0016491GO:GO:0018298
GO:GO:0045156GO:GO:0046872Gramene:ATCG00020.1HAMAP:MF_01379hmmpanther:PTHR33149hmmpanther:PTHR33149:SF6HOGENOM:HOG000246913
InParanoid:P83755IntAct:P83755InterPro:IPR000484InterPro:IPR005867iPTMnet:P83755KEGG:ath:ArthCp002KO:K02703
MINT:MINT-8360520OMA:CFTIAFIPaxDb:P83755Pfam:P83755Pfam:PF00124PIR:S57265PRIDE:P83755
PRINTS:PR00256PRO:PR:P83755PROSITE:PS00244ProteinModelPortal:P83755Proteomes:UP000006548RefSeq:NP_051039.1scanprosite:PS00244
SMR:P83755STRING:3702.ATCG00020.1SUPFAM:SSF81483TAIR:ATCG00020tair10-symbols:PSBATIGRfam:TIGR01151TIGRFAMs:TIGR01151
TMHMM:TMhelixUniProt:P83755
Coordinates (TAIR10) chrC:-:383..1444
Molecular Weight (calculated) 38938.70 Da
IEP (calculated) 4.94
GRAVY (calculated) 0.33
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)