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AT5G67530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : plant U-box 49
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plant U-box 49 (PUB49); FUNCTIONS IN: ubiquitin-protein ligase activity, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), U box domain (InterPro:IPR003613), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G01940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G67530-MONOMERBioGrid:22131EC:5.2.1.8EC:6.3.2.-eggNOG:COG0652eggNOG:KOG0883EMBL:AB013390
EMBL:AY062106EMBL:AY062516EMBL:AY093296EMBL:AY568528EMBL:BT001006EMBL:CP002688EnsemblPlants:AT5G67530
EnsemblPlants:AT5G67530.1entrez:836889Gene3D:2.40.100.10Gene3D:3.30.40.10GeneID:836889Genevisible:Q9FJX0GO:GO:0000209
GO:GO:0003755GO:GO:0005634GO:GO:0006457GO:GO:0016874GO:GO:0034450Gramene:AT5G67530.1hmmpanther:PTHR11071
hmmpanther:PTHR11071:SF147HOGENOM:HOG000177172InParanoid:Q9FJX0IntAct:Q9FJX0InterPro:IPR002130InterPro:IPR003613InterPro:IPR013083
InterPro:IPR020892InterPro:IPR024936InterPro:IPR029000KEGG:ath:AT5G67530KO:K10598ncoils:CoilOMA:FEYPVCT
PANTHER:PTHR11071PaxDb:Q9FJX0Pfam:PF00160Pfam:Q9FJX0Pfscan:PS50072Pfscan:PS51698PhylomeDB:Q9FJX0
PRIDE:Q9FJX0PRINTS:PR00153PRO:PR:Q9FJX0PROSITE:PS00170PROSITE:PS50072PROSITE:PS51698ProteinModelPortal:Q9FJX0
Proteomes:UP000006548RefSeq:NP_201554.1scanprosite:PS00170SMART:SM00504SMR:Q9FJX0STRING:3702.AT5G67530.1SUPFAM:SSF50891
SUPFAM:SSF57850TAIR:AT5G67530tair10-symbols:ATPUB49tair10-symbols:PUB49UniGene:At.27316UniGene:At.49238UniPathway:UPA00143
UniProt:Q9FJX0
Coordinates (TAIR10) chr5:+:26941260..26943878
Molecular Weight (calculated) 65026.90 Da
IEP (calculated) 8.36
GRAVY (calculated) -0.50
Length 595 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEN RTPFKSLPYY CCALTFLPFE DPVCTIDGSV FEITTIVPYI RKFGKHPVTG APLKGEDLIP LIFHKNSEGE
101: YHCPVLNKVF TEFTHIVAVK TTGNVFCYEA IKELNIKTKN WKELLTEEPF TRADLITIQN PNAVDGKVTV EFDHVKNGLK IDDEELKKMN SDPAYNINVS
201: GDIKHMLADL GTDKAKEIAL HGGGGNKARN ERAAAIAAIL ESRSKIKEVS KAEQPKQTYS VVDAASASVF GRSADAAKAG SSDKTAARIA MHMAGDRTPV
301: NSKMVKSRYS SGAASRSFTS SAFTPVTKND FELIKVEKNP KKKGYVQFQT THGDLNIELH CDIAPRACEN FITLCERGYY NGVAFHRSIR NFMIQGGDPT
401: GTGKGGESIW GKPFKDEPNS KLLHSGRGVV SMANSGPHTN GSQFFVLYKS ATHLNYKHTV FGGVVGGLAT LAAMENVPVD ESDRPLEEIK IIEASVFVNP
501: YTELDEEEEK EKAEKEKNED KDIEKIGSWY SNPGSGTTEA GAGGGGVGKY LKAMSSTATK DTKGSLDSDI STIGVSKKRK TTASASTGFK DFSSW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)