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AT5G67480.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BTB and TAZ domain protein 4
Curator
Summary (TAIR10)
BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.
Computational
Description (TAIR10)
BTB and TAZ domain protein 4 (BT4); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: response to auxin stimulus, response to gibberellin stimulus; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Zinc finger, TAZ-type (InterPro:IPR000197), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB and TAZ domain protein 5 (TAIR:AT4G37610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:22126eggNOG:ENOG410IRV9eggNOG:ENOG410Z8TCEMBL:AB013390
EMBL:AF446873EMBL:AY052213EMBL:AY316677EMBL:CP002688
EnsemblPlants:AT5G67480EnsemblPlants:AT5G67480.1EnsemblPlants:AT5G67480.2entrez:836884
ExpressionAtlas:Q9FJX5Gene3D:1.20.1020.10GeneID:836884Genevisible:Q9FJX5
GO:GO:0003712GO:GO:0004402GO:GO:0005516GO:GO:0005634
GO:GO:0005737GO:GO:0005774GO:GO:0006355GO:GO:0008270
GO:GO:0009611GO:GO:0009651GO:GO:0009733GO:GO:0009739
GO:GO:0009751GO:GO:0009753GO:GO:0016567GO:GO:0042542
hmmpanther:PTHR24413hmmpanther:PTHR24413:SF129HOGENOM:HOG000239221InParanoid:Q9FJX5
IntAct:Q9FJX5InterPro:IPR000197InterPro:IPR000210InterPro:IPR011333
KEGG:ath:AT5G67480OMA:HFAGCKLPaxDb:Q9FJX5Pfam:PF00651
Pfam:PF02135Pfam:Q9FJX5Pfscan:PS50097PhylomeDB:Q9FJX5
PRIDE:Q9FJX5PRO:PR:Q9FJX5PROSITE:PS50097ProteinModelPortal:Q9FJX5
Proteomes:UP000006548RefSeq:NP_201549.1RefSeq:NP_975007.1SMART:SM00225
SMART:SM00551SMR:Q9FJX5STRING:3702.AT5G67480.2SUPFAM:SSF54695
SUPFAM:SSF57933TAIR:AT5G67480tair10-symbols:ATBT4tair10-symbols:BT4
UniGene:At.20666UniPathway:UPA00143UniProt:Q9FJX5
Coordinates (TAIR10) chr5:-:26931055..26932496
Molecular Weight (calculated) 42463.80 Da
IEP (calculated) 9.41
GRAVY (calculated) -0.33
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTGCVDLHQ SFKSADSSSV PIPPPLPSKS DGLKKKLGHS SVSTATRDMW DRLFNDGYKA DVVIYTDNGS IIYAHANILG TASTVIKGML KQAKRHGKWH
101: TISIRGVPHD AVRVFIRFLY SSCYEKEEMN EFIMHLLLLS HAYVVPQLKR VCEWHLEHGL LTTENVVDVF QLALLCDFPR LSLISHRMIM KHFNELSATE
201: AWTAMKKSHP FLEKEVRDSV IIEANTRKER MRKRNDQRIY SQLYEAMEAL VHICRDGCKT IGPHDKDFKP NHATCNYEAC KGLESLIRHF AGCKLRVPGG
301: CVHCKRMWQL LELHSRVCAG SDQCRVPLCR NLKEKMEKQS KKDESRWKLL VKNVLGSKKI GGSPFFLPVT NC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)