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AT5G67400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23323832 (2013): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : root hair specific 19
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
root hair specific 19 (RHS19); FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root hair, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G49960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G67400-MONOMEREC:1.11.1.7eggNOG:ENOG410IJ72eggNOG:ENOG4111FDSEMBL:AB007645EMBL:CP002688EMBL:X98323
EMBL:X98928EnsemblPlants:AT5G67400EnsemblPlants:AT5G67400.1entrez:836876ExpressionAtlas:Q43873GeneID:836876Genevisible:Q43873
GO:GO:0004601GO:GO:0005576GO:GO:0006979GO:GO:0020037GO:GO:0042744GO:GO:0046872Gramene:AT5G67400.1
hmmpanther:PTHR31517hmmpanther:PTHR31517:SF3HOGENOM:HOG000237556InParanoid:Q43873InterPro:IPR000823InterPro:IPR002016InterPro:IPR010255
InterPro:IPR019793KEGG:00940+1.11.1.7KEGG:ath:AT5G67400KO:K00430OMA:HAFDNQYPaxDb:Q43873PeroxiBase:239
Pfam:PF00141Pfam:Q43873Pfscan:PS50873PhylomeDB:Q43873PRIDE:Q43873PRINTS:PR00458PRINTS:PR00461
PRO:PR:Q43873PROSITE:PS00435PROSITE:PS50873ProteinModelPortal:Q43873Proteomes:UP000006548RefSeq:NP_201541.1scanprosite:PS00435
SMR:Q43873STRING:3702.AT5G67400.1SUPFAM:SSF48113TAIR:AT5G67400tair10-symbols:RHS19UniGene:At.66740UniGene:At.95
UniProt:A3KPG1UniProt:Q43873
Coordinates (TAIR10) chr5:+:26894896..26896300
Molecular Weight (calculated) 35929.40 Da
IEP (calculated) 9.93
GRAVY (calculated) -0.12
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MARFSLVVVV TLSLAISMFP DTTTAQLKTN FYGNSCPNVE QIVKKVVQEK IKQTFVTIPA TLRLFFHDCF VNGCDASVMI QSTPTNKAEK DHPDNISLAG
101: DGFDVVIKAK KALDAIPSCK NKVSCADILA LATRDVVVAA KGPSYAVELG RFDGLVSTAA SVNGNLPGPN NKVTELNKLF AKNKLTQEDM IALSAAHTLG
201: FAHCGKVFNR IYNFNLTHAV DPTLNKAYAK ELQLACPKTV DPRIAINMDP TTPRQFDNIY FKNLQQGKGL FTSDQVLFTD GRSKPTVNDW AKNSVAFNKA
301: FVTAMTKLGR VGVKTRRNGN IRRDCGAFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)