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AT5G67340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.592
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: endomembrane system, ubiquitin ligase complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410XRTNeggNOG:KOG0167EMBL:AB007645EMBL:AK229487EMBL:BT015818EMBL:BT020206
EMBL:CP002688EnsemblPlants:AT5G67340EnsemblPlants:AT5G67340.1entrez:836869Gene3D:1.25.10.10Gene3D:3.30.40.10GeneID:836869
Genevisible:Q5XEZ8GO:GO:0004842GO:GO:0016874Gramene:AT5G67340.1hmmpanther:PTHR23315hmmpanther:PTHR23315:SF7HOGENOM:HOG000238412
InParanoid:Q5XEZ8InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024iPTMnet:Q5XEZ8
KEGG:ath:AT5G67340OMA:CEQHLPAPaxDb:Q5XEZ8Pfam:PF00514Pfam:PF04564Pfam:Q5XEZ8Pfscan:PS50176
Pfscan:PS51698PhylomeDB:Q5XEZ8PRIDE:Q5XEZ8PRO:PR:Q5XEZ8PROSITE:PS50176PROSITE:PS51698ProteinModelPortal:Q5XEZ8
Proteomes:UP000006548RefSeq:NP_201535.3SMART:SM00185SMART:SM00504SMR:Q5XEZ8STRING:3702.AT5G67340.1SUPFAM:SSF48371
SUPFAM:SSF57850TAIR:AT5G67340UniGene:At.28815UniPathway:UPA00143UniProt:Q5XEZ8
Coordinates (TAIR10) chr5:+:26864996..26867450
Molecular Weight (calculated) 78124.50 Da
IEP (calculated) 5.17
GRAVY (calculated) -0.16
Length 707 amino acids
Sequence (TAIR10)
(BLAST)
001: MMVHMEVSWL RVLLDNISSY LSLSSMDDLS SNPAHKYYTR GEDIGKLIKP VLENLIDSDA APSELLNNGF EELAQYVDEL REQFQSWQPL STRIFYVLRI
101: ESLASKLRES SLEVFQLLKH CEQHLPADLI SPSFEECIEL VKLVARDEIS YTIDQALKDQ KKGVGPTSEV LVKIAESTGL RSNQEILVEG VVLTNMKEDA
201: ELTDNDTEAE YLDGLISLTT QMHEYLSDIK QAQLRCPVRV PSDFRCSLSL ELMTDPVIVA SGQTFERVFI QKWIDMGLMV CPKTRQALSH TTLTPNFIVR
301: AFLASWCETN NVYPPDPLEL IHSSEPFPLL VESVRASSSE NGHSESLDAE ELRQVFSRSA SAPGIVSEVV CKTKRNNNAA ADRSLTRSNT PWKFPEERHW
401: RHPGIIPATV RETGSSSSIE TEVKKLIDDL KSSSLDTQRE ATARIRILAR NSTDNRIVIA RCEAIPSLVS LLYSTDERIQ ADAVTCLLNL SINDNNKSLI
501: AESGAIVPLI HVLKTGYLEE AKANSAATLF SLSVIEEYKT EIGEAGAIEP LVDLLGSGSL SGKKDAATAL FNLSIHHENK TKVIEAGAVR YLVELMDPAF
601: GMVEKAVVVL ANLATVREGK IAIGEEGGIP VLVEVVELGS ARGKENATAA LLQLCTHSPK FCNNVIREGV IPPLVALTKS GTARGKEKAQ NLLKYFKAHR
701: QSNQRRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)