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AT5G67320.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At5g67320
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WD-40 repeat family protein
Curator
Summary (TAIR10)
Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing.
Computational
Description (TAIR10)
high expression of osmotically responsive genes 15 (HOS15); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRSYeggNOG:KOG0273EMBL:AB007645EMBL:AY057698
EMBL:AY143932EMBL:CP002688EnsemblPlants:AT5G67320EnsemblPlants:AT5G67320.1
entrez:836867Gene3D:2.130.10.10GeneID:836867GO:GO:0005634
GO:GO:0009409GO:GO:0016575GO:GO:0080008Gramene:AT5G67320.1
hmmpanther:PTHR22846hmmpanther:PTHR22846:SF41HOGENOM:HOG000220902InterPro:IPR001680
InterPro:IPR006594InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775
InterPro:IPR020472KEGG:ath:AT5G67320KO:K04508ncoils:Coil
OMA:EPRTEKTPfam:PF00400Pfam:PF08513Pfscan:PS50082
Pfscan:PS50294Pfscan:PS50896PhylomeDB:Q9FN19PRINTS:PR00320
PRO:PR:Q9FN19PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294
PROSITE:PS50896Proteomes:UP000006548RefSeq:NP_201533.1scanprosite:PS00678
SMART:SM00320SMART:SM00667SMR:Q9FN19STRING:3702.AT5G67320.1
SUPFAM:SSF50978TAIR:AT5G67320tair10-symbols:HOS15UniGene:At.6493
UniProt:Q9FN19
Coordinates (TAIR10) chr5:+:26857268..26860974
Molecular Weight (calculated) 69775.90 Da
IEP (calculated) 5.95
GRAVY (calculated) -0.80
Length 613 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)