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AT5G67270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : end binding protein 1C
Curator
Summary (TAIR10)
encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.
Computational
Description (TAIR10)
end binding protein 1C (EB1C); CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: microtubule end binding protein EB1A (TAIR:AT3G47690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:22104eggNOG:COG5217eggNOG:KOG3000EMBL:AB025614EMBL:AK175495EMBL:AY087775EMBL:BT028930
EMBL:CP002688EnsemblPlants:AT5G67270EnsemblPlants:AT5G67270.1entrez:836862Gene3D:1.10.418.10GeneID:836862Genevisible:Q9FGQ6
GO:GO:0005618GO:GO:0005634GO:GO:0005730GO:GO:0005819GO:GO:0005874GO:GO:0007067GO:GO:0008017
GO:GO:0009524GO:GO:0009652GO:GO:0030865GO:GO:0051301Gramene:AT5G67270.1hmmpanther:PTHR10623hmmpanther:PTHR10623:SF15
HOGENOM:HOG000198048InParanoid:Q9FGQ6InterPro:IPR001715InterPro:IPR004953InterPro:IPR027328KEGG:ath:AT5G67270KO:K10436
OMA:NIQTSGRPANTHER:PTHR10623PaxDb:Q9FGQ6Pfam:PF00307Pfam:PF03271Pfam:Q9FGQ6Pfscan:PS50021
Pfscan:PS51230PhylomeDB:Q9FGQ6PRO:PR:Q9FGQ6PROSITE:PS50021PROSITE:PS51230ProteinModelPortal:Q9FGQ6Proteomes:UP000006548
RefSeq:NP_201528.1SMR:Q9FGQ6STRING:3702.AT5G67270.1SUPFAM:0049734SUPFAM:SSF140612SUPFAM:SSF47576TAIR:AT5G67270
tair10-symbols:ATEB1Ctair10-symbols:ATEB1H1tair10-symbols:EB1CUniGene:At.28817UniProt:Q9FGQ6
Coordinates (TAIR10) chr5:-:26840248..26841984
Molecular Weight (calculated) 36387.90 Da
IEP (calculated) 8.15
GRAVY (calculated) -0.65
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MATNIGMMDS AYFVGRSEIL AWINSTLQLN LSKVEEACSG AVHCQLMDSV HPGTVPMHKV NFDAKSEYEM IQNYKVLQDV FNKLKITKHI EVSKLVKGRP
101: LDNLEFMQWM KKYCDSVNGG QHNYHALERR EASKGGKEAT KRAAATQQSG KSSSSSAPPR PSSSNGTRKH EPQSNNTGTH HSSTGNHHHS SKPSAKQSKP
201: VPAYDEKITE LKLYIDSLEK ERDFYFSKLR DVEILCQNPD TEHLPLVGSI KRILYAADGE DVGAAETQTL SPIAEGSEER RNSVTESQKR KLIVNLDVDV
301: AAITTLSPRQ RLSDASDVKC SGSSPLLTC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)