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AT5G67260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At5g67260
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CYCLIN D3;2
Curator
Summary (TAIR10)
Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.
Computational
Description (TAIR10)
CYCLIN D3;2 (CYCD3;2); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle, regulation of cell proliferation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D3;3 (TAIR:AT3G50070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:22103DNASU:836861eggNOG:ENOG410XRKCeggNOG:KOG0656
EMBL:AB025614EMBL:AY062645EMBL:AY087540EMBL:AY093254
EMBL:CP002688EnsemblPlants:AT5G67260EnsemblPlants:AT5G67260.1entrez:836861
Gene3D:1.10.472.10GeneID:836861Genevisible:Q9FGQ7GO:GO:0005634
GO:GO:0007049GO:GO:0048316GO:GO:0051301Gramene:AT5G67260.1
hmmpanther:PTHR10177hmmpanther:PTHR10177:SF216HOGENOM:HOG000242458InParanoid:Q9FGQ7
IntAct:Q9FGQ7InterPro:IPR004367InterPro:IPR006671InterPro:IPR013763
KEGG:ath:AT5G67260KO:K14505OMA:MRLPSINPaxDb:Q9FGQ7
Pfam:PF00134Pfam:PF02984Pfam:Q9FGQ7PhylomeDB:Q9FGQ7
PRIDE:Q9FGQ7PRO:PR:Q9FGQ7PROSITE:PS00292ProteinModelPortal:Q9FGQ7
Proteomes:UP000006548RefSeq:NP_201527.1scanprosite:PS00292SMART:SM00385
SMART:SM01332SMR:Q9FGQ7STRING:3702.AT5G67260.1SUPFAM:SSF47954
TAIR:AT5G67260tair10-symbols:CYCD3;2UniGene:At.27278UniProt:Q9FGQ7
Coordinates (TAIR10) chr5:+:26836313..26837665
Molecular Weight (calculated) 42353.70 Da
IEP (calculated) 4.38
GRAVY (calculated) -0.17
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MALEKEEEAS QNGAFCVLDG LYCEEETGFV EDDLDDDGDL DFLEKSDESV VKFQFLPLLD MFLWDDDEIL SLISKENETN PCFGEQILDG FLVSCRKEAL
101: DWVLRVKSHY GFTSLTAILA VNYFDRFMTS IKLQTDKPWM SQLVAVASLS LAAKVEEIQV PLLLDLQVEE ARYLFEAKTI QRMELLILST LQWRMHPVTP
201: ISFFDHIIRR FGSKWHQQLD FCRKCERLLI SVIADTRFMR YFPSVLATAI MILVFEELKP CDEVEYQSQI TTLLKVNQEK VNECYELLLE HNPSKKRMMN
301: LVDQDSPSGV LDFDDSSNSS WNVSTTASVS SSSSSPEPLL KRRRVQEQQM RLPSINRMFL DVLSSPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)